FAIRTraits:一个丰富的、符合fair标准的数据库,收录了240个地中海种群的植物性状。

IF 4.3 2区 环境科学与生态学 Q1 ECOLOGY
Ecology Pub Date : 2025-09-24 DOI:10.1002/ecy.70219
Éric Garnier, Léo Delalandre, Jules Segrestin, Karim Barkaoui, Elena Kazakou, Marie-Laure Navas, Denis Vile, Cyrille Violle, Maud Bernard-Verdier, Marine Birouste, Alain Blanchard, Iris Bumb, Pablo Cruz, Sandrine Debain, Adeline Fayolle, Claire Fortunel, Karl Grigulis, Gérard Laurent, Sandra Lavorel, Francisco Lloret, Ignacio M. Pérez-Ramos, Iván Prieto, Catherine Roumet
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引用次数: 0

摘要

以性状为基础的生态学依赖于高质量的、记录良好的数据来探索植物性状与环境条件、群落聚集和生态系统功能的关系。然而,性状数据的重用和综合仍然受到以下几个制约因素的限制:缺乏详细的元数据,异构协议,缺乏个体水平的测量,以及某些性状类型(特别是地下性状)的代表性不足。许多现有的数据集也缺乏必要的环境细节来研究局部尺度上的性状-环境关系。在这里,我们提出了FAIRTraits,这是一个综合数据集,通过收集1997年至2023年间收集的地中海北部盆地240种维管植物1955个种群的189,452条定量性状测量记录来解决这些局限性。地中海北部盆地以其独特的生物多样性和气候变化热点而闻名。所有数据均由一个研究小组收集,使用一致且记录良好的现场和实验室协议,确保性状、物种、地点和年份之间的内部一致性。FAIRTraits包括在个体或复制水平上测量的180个特征,没有聚合。它的特征是前所未有的多样性,跨越了所有主要的植物器官——叶、茎、根和生殖器官。这些包括广泛使用的性状,如比叶面积和株高,但也有很少报道的性状,特别是与根形态有关的地下性状,以及机械特性,物候学和微生物关联。除了原始测量外,还对物种进行了分类描述(例如,生命形式、光合途径和演替状态)以及取自地中海植物群的物种水平值的注释,以获取生殖物候和最大高度等关键性状。为了支持解释环境变异性的分析,每次观测都与个人取样地点的详细描述相关联,包括气候数据、土壤理化性质和干扰制度。提供了每个特征和环境变量的采样方案和测量方法的完整元数据。FAIRTraits是根据FAIR数据管理原则(可查找、可访问、可互操作和可重用)构建的。元数据使用生态元数据语言(EML)进行描述;Trait定义使用社区认可的语义资源进行标准化。数据存档在两个可互操作的存储库中:GBIF(通过达尔文核心和性状特定扩展)用于分类-性状关联,InDoRES用于环境和上下文数据。这些努力确保了长期保存,数据可追溯性,以及与植物性状数据库(如BROT或TRY)和跨生物计划(如开放性状网络或生命百科全书)的无缝集成。FAIRTraits为研究植物功能策略、性状-环境关系以及从个体到群落和生态系统的扩展提供了一个强大的、记录丰富的、可重复使用的资源。它还提供了一个具体的例子,说明特征数据集如何满足数据质量和互操作性的最高标准——作为未来社区主导的功能生态学倡议的模型。FAIRTraits数据库在CC-BY Attribution 4.0国际许可协议下发布。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

FAIRTraits: An enriched, FAIR-compliant database of plant traits from Mediterranean populations of 240 species

FAIRTraits: An enriched, FAIR-compliant database of plant traits from Mediterranean populations of 240 species

Trait-based ecology relies on high-quality, well-documented data to explore how plant traits relate to environmental conditions, community assembly, and ecosystem functioning. However, the reuse and synthesis of trait data across studies remain limited by several constraints: a lack of detailed metadata, heterogeneous protocols, absence of individual-level measurements, and underrepresentation of certain trait types—particularly below-ground traits. Many existing datasets also lack the environmental details necessary to investigate trait–environment relationships at local scales. Here, we present FAIRTraits, a comprehensive dataset that addresses these limitations by compiling 189,452 records of quantitative trait measurements collected between 1997 and 2023 from 1955 populations of 240 vascular plant species in the Northern Mediterranean Basin, a region known both for its exceptional biodiversity and as a climate change hotspot. All data were collected by a single research group using consistent and well-documented field and laboratory protocols, ensuring internal consistency across traits, species, sites, and years. FAIRTraits includes 180 traits measured at the individual or replicate level, with no aggregation. It features an unprecedented diversity of traits spanning all major plant organs—leaves, stems, roots, and reproductive parts. These include widely used traits such as specific leaf area and plant height, but also traits that are rarely reported, especially below-ground traits related to root morphology, as well as mechanical properties, phenology, and microbial associations. In addition to raw measurements, species are annotated with categorical descriptors (e.g., life form, photosynthetic pathway, and successional status), and species-level values taken from a Mediterranean flora, for key traits such as reproductive phenology and maximum height. To support analyses that account for environmental variability, each observation is linked to detailed descriptors of the plot where the individual was sampled, including climate data, soil physicochemical properties, and disturbance regime. Full metadata on sampling protocols and measurement methods are provided for every trait and environmental variable. FAIRTraits was built in compliance with the FAIR principles of data management (Findable, Accessible, Interoperable, and Reusable). Metadata are described using the Ecological Metadata Language (EML); trait definitions are standardized using community-endorsed semantic resources. The data are archived across two interoperable repositories: GBIF (via Darwin Core and trait-specific extensions) for taxon–trait associations and InDoRES for environmental and contextual data. These efforts ensure long-term preservation, data traceability, and seamless integration with plant trait databases such as BROT or TRY, and cross-organism initiatives such as the Open Traits Network or the Encyclopedia of Life. FAIRTraits offers a robust, richly documented, and reusable resource for investigating plant functional strategies, trait–environment relationships, and scaling from individuals to communities and ecosystems. It also provides a concrete example of how trait datasets can meet the highest standards of data quality and interoperability—serving as a model for future community-led initiatives in functional ecology. The FAIRTraits database is released under the CC-BY Attribution 4.0 International license.

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来源期刊
Ecology
Ecology 环境科学-生态学
CiteScore
8.30
自引率
2.10%
发文量
332
审稿时长
3 months
期刊介绍: Ecology publishes articles that report on the basic elements of ecological research. Emphasis is placed on concise, clear articles documenting important ecological phenomena. The journal publishes a broad array of research that includes a rapidly expanding envelope of subject matter, techniques, approaches, and concepts: paleoecology through present-day phenomena; evolutionary, population, physiological, community, and ecosystem ecology, as well as biogeochemistry; inclusive of descriptive, comparative, experimental, mathematical, statistical, and interdisciplinary approaches.
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