阐明人脑能量代谢模型中的反应动力学。

IF 3.6 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
PLoS Computational Biology Pub Date : 2025-09-24 eCollection Date: 2025-09-01 DOI:10.1371/journal.pcbi.1013504
Dimitrios G Patsatzis, Efstathios-Al Tingas, Subram Mani Sarathy, Dimitris A Goussis, Renaud Blaise Jolivet
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引用次数: 0

摘要

能量代谢对大脑功能至关重要,但它的研究在实验上具有挑战性。同样,生物学上精确的计算模型对于简单的调查来说过于复杂。在这里,我们使用计算奇异摄动分析了一个实验校准的人脑能量代谢的多尺度模型。这种方法导致了突触激活期间和之后功能期的新鉴定,并突出了在这些时期内控制系统行为的中枢反应和代谢物。我们确定了氧化和糖酵解星形细胞代谢在驱动大脑代谢回路中的关键作用。我们还确定磷酸肌酸是脑细胞的主要内源性能量供应,并提出相应的修改我们的脑能代谢观点。我们的方法强调了神经胶质细胞在脑代谢中的重要性,并引入了一种系统和公正的方法来研究复杂生化网络的动力学,原则上可以扩展到任何规模和复杂性的代谢网络。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Elucidating reaction dynamics in a model of human brain energy metabolism.

Energy metabolism is essential to brain function and Bioinformatics, but its study is experimentally challenging. Similarly, biologically accurate computational models are too complex for simple investigations. Here, we analyse an experimentally-calibrated multiscale model of human brain energy metabolism using Computational Singular Perturbation. This approach leads to the novel identification of functional periods during and after synaptic activation, and highlights the central reactions and metabolites controlling the system's behaviour within those periods. We identify a key role for both oxidative and glycolytic astrocytic metabolism in driving the brain's metabolic circuitry. We also identify phosphocreatine as the main endogenous energy supply to brain cells, and propose revising our view of brain energy metabolism accordingly. Our approach highlights the importance of glial cells in brain metabolism, and introduces a systematic and unbiased methodology to study the dynamics of complex biochemical networks that can be scaled, in principle, to metabolic networks of any size and complexity.

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来源期刊
PLoS Computational Biology
PLoS Computational Biology BIOCHEMICAL RESEARCH METHODS-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
7.10
自引率
4.70%
发文量
820
审稿时长
2.5 months
期刊介绍: PLOS Computational Biology features works of exceptional significance that further our understanding of living systems at all scales—from molecules and cells, to patient populations and ecosystems—through the application of computational methods. Readers include life and computational scientists, who can take the important findings presented here to the next level of discovery. Research articles must be declared as belonging to a relevant section. More information about the sections can be found in the submission guidelines. Research articles should model aspects of biological systems, demonstrate both methodological and scientific novelty, and provide profound new biological insights. Generally, reliability and significance of biological discovery through computation should be validated and enriched by experimental studies. Inclusion of experimental validation is not required for publication, but should be referenced where possible. Inclusion of experimental validation of a modest biological discovery through computation does not render a manuscript suitable for PLOS Computational Biology. Research articles specifically designated as Methods papers should describe outstanding methods of exceptional importance that have been shown, or have the promise to provide new biological insights. The method must already be widely adopted, or have the promise of wide adoption by a broad community of users. Enhancements to existing published methods will only be considered if those enhancements bring exceptional new capabilities.
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