辐射诱导DNA损伤修复相关基因作为辐射诊断生物标志物的研究。

IF 2 4区 医学 Q2 BIOLOGY
Qi Zhang, Yi Yu
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引用次数: 0

摘要

辐射暴露是多种肿瘤和疾病的重要危险因素,早期辐射剂量与疾病进展密切相关。准确评估辐射暴露对有效治疗至关重要。本研究旨在利用加权基因共表达网络分析GSE90909和GSE102971数据集,并辅以文献,鉴定辐射诱导的DNA损伤修复相关基因。构建蛋白-蛋白相互作用网络,鉴定关键基因,比较辐照组和对照组的表达水平,评价诊断效果。计算免疫相关评分,并分析诊断基因与免疫细胞之间的相关性。利用GeneMANIA建立了涉及转录因子(tf)、microRNAs (miRNAs)和关键基因的调控网络,以及基因相互作用网络。基因-药物相互作用网络也得到了发展。5个关键基因pcna、REV3L、POLH、LIG1和xpc在辐照人群中均显著过表达。这些基因对辐射暴露表现出较强的诊断能力,并与辐射剂量呈正相关。它们的表达水平也与免疫细胞浸润密切相关,包括自然杀伤细胞、浆细胞样树突状细胞和调节性T细胞。关键的调控相互作用涉及tf (E2F1, TP53)和mirna (miR-145, miR-143),而相关基因包括FEN1, REV1和CDKN1A。与这些基因相关的药物包括槲皮素和羟基脲。综上所述,本研究确定了5个具有辐射暴露诊断潜力的关键基因,它们与辐射剂量呈正相关。这些发现为辐射诊断和剂量评估提供了基础,特别是在疾病晚期人群中。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Investigation of radiation-induced DNA damage repair-related genes as diagnostic biomarkers for radiation.

Radiation exposure is a significant risk factor for various tumors and illnesses, with early-stage radiation dose closely linked to disease progression. Accurate assessment of radiation exposure is critical for effective treatment. This study aimed to identify radiation-induced DNA damage repair-related genes using weighted gene co-expression network analysis on datasets GSE90909 and GSE102971, supplemented by literature. A protein-protein interaction network was constructed to identify key genes, and their expression levels were compared between irradiated and control groups to evaluate diagnostic efficacy. Immune-related scores were calculated, and correlations between diagnostic genes and immune cells were analyzed. Regulatory networks involving transcription factors (TFs), microRNAs (miRNAs) and key genes were established, alongside gene interaction networks using GeneMANIA. A gene-drug interaction network was also developed. Five key genes-PCNA, REV3L, POLH, LIG1 and XPC-were identified, all significantly overexpressed in irradiated populations. These genes demonstrated strong diagnostic capability for radiation exposure and were positively correlated with radiation dose. Their expression levels were also closely associated with immune cell infiltration, including natural killer cells, plasma cell-like dendritic cells and regulatory T cells. Key regulatory interactions involved TFs (E2F1, TP53) and miRNAs (miR-145, miR-143), while associated genes included FEN1, REV1 and CDKN1A. Drugs linked to these genes included Quercetin and Hydroxyurea. In conclusion, the study identified five key genes with diagnostic potential for radiation exposure, positively correlated with radiation dose. These findings provide a foundation for radiation diagnosis and dose assessment, particularly in populations with later-stage diseases.

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来源期刊
CiteScore
3.60
自引率
5.00%
发文量
86
审稿时长
4-8 weeks
期刊介绍: The Journal of Radiation Research (JRR) is an official journal of The Japanese Radiation Research Society (JRRS), and the Japanese Society for Radiation Oncology (JASTRO). Since its launch in 1960 as the official journal of the JRRS, the journal has published scientific articles in radiation science in biology, chemistry, physics, epidemiology, and environmental sciences. JRR broadened its scope to include oncology in 2009, when JASTRO partnered with the JRRS to publish the journal. Articles considered fall into two broad categories: Oncology & Medicine - including all aspects of research with patients that impacts on the treatment of cancer using radiation. Papers which cover related radiation therapies, radiation dosimetry, and those describing the basis for treatment methods including techniques, are also welcomed. Clinical case reports are not acceptable. Radiation Research - basic science studies of radiation effects on livings in the area of physics, chemistry, biology, epidemiology and environmental sciences. Please be advised that JRR does not accept any papers of pure physics or chemistry. The journal is bimonthly, and is edited and published by the JRR Editorial Committee.
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