烟雾病的差异表达基因和生物学途径:转录组学研究的系统回顾和荟萃分析。

IF 4.3 2区 医学 Q1 CLINICAL NEUROLOGY
Yunru Chen, Hao Xing Lai, Eda Liew, Teng Hiang Heng, Megan B Ng, Vijay Kumar Sharma, Raymond C S Seet, Poh San Lai, Shaun S E Loong, Benjamin Y Q Tan
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引用次数: 0

摘要

烟雾病(MMD)是一种以双侧颈内动脉进行性狭窄为特征的慢性脑血管疾病,主要影响东亚人群。RNA表达研究的最新进展为烟雾病的分子基础提供了见解。本研究旨在收集转录组学数据,以确定已发表研究中的顶级差异表达基因(DEGs),并阐明与烟雾病相关的生物学途径。我们对PubMed和Embase数据库进行了系统搜索,确定了15项转录组研究,涉及177例MMD患者的RNA转录组全范围分析。在对显著上调和下调的基因进行预处理后,我们进行了生物途径富集分析,以确定烟雾病患者和对照组之间的deg。此外,还进行了基因-转录因子和基因-药物相互作用分析,以探索潜在的治疗用途。我们的分析显示98个deg上调,37个deg下调(bonferroni调整p值)
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Differentially Expressed Genes and Biological Pathways in Moyamoya Disease: A Systematic Review and Meta-analysis of Transcriptomic Studies.

Moyamoya disease (MMD) is a chronic cerebrovascular disorder characterised by the progressive stenosis of bilateral internal carotid arteries, predominantly affecting East Asian populations. Recent advances in RNA expression studies have provided insights into the molecular underpinnings of MMD. This study aims to aggregate transcriptomic data to identify the top differentially expressed genes (DEGs) across published studies and elucidate biological pathways associated with MMD. We conducted a systematic search of the PubMed and Embase databases, identifying 15 transcriptomic studies involving RNA transcriptome-wide analyses of 177 MMD patients. Following preprocessing of significantly upregulated and downregulated Genes, we performed biological pathway enrichment analysis to identify DEGs between MMD patients and control. Additionally, Gene-transcription factor and Gene-drug interaction analyses were conducted to explore potential therapeutic repurposing. Our analysis revealed 98 upregulated and 37 downregulated DEGs (Bonferroni-adjusted p-values < 0.05) significantly associated with MMD. In peripheral blood cells (PBCs), upregulated pathways were predominantly associated with mitotic kinetochore assembly and response to axon injury, while downregulated pathways were linked to cellular response to brain-derived neurotrophic factor (BDNF) and extracellular matrix organization. In vascular tissues, mitotic pathways were notably upregulated, whereas the regulation of cell proliferation and blood circulation pathways were suppressed. Gene-drug interaction analysis highlighted MI-773 and MLN 8237 as potential MMD therapy. This study identifies distinct biological pathways that are dysregulated in key tissues of MMD patients. Given the current limited treatment options for MMD, our findings offer potential biomarkers for risk stratification and novel therapeutic targets that could pave the way for improved management of this debilitating disease.

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来源期刊
Translational Stroke Research
Translational Stroke Research CLINICAL NEUROLOGY-NEUROSCIENCES
CiteScore
13.80
自引率
4.30%
发文量
130
审稿时长
6-12 weeks
期刊介绍: Translational Stroke Research covers basic, translational, and clinical studies. The Journal emphasizes novel approaches to help both to understand clinical phenomenon through basic science tools, and to translate basic science discoveries into the development of new strategies for the prevention, assessment, treatment, and enhancement of central nervous system repair after stroke and other forms of neurotrauma. Translational Stroke Research focuses on translational research and is relevant to both basic scientists and physicians, including but not restricted to neuroscientists, vascular biologists, neurologists, neuroimagers, and neurosurgeons.
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