{"title":"一种高效的gpu加速自适应网格细化框架,用于高保真可压缩反应流建模","authors":"Yuqi Wang , Yadong Zeng , Ralf Deiterding , Jianhan Liang","doi":"10.1016/j.cpc.2025.109870","DOIUrl":null,"url":null,"abstract":"<div><div>This paper presents a heterogeneous adaptive mesh refinement (AMR) framework for exascale simulations of non-stiff/moderately stiff chemical kinetics. The framework features an efficient time-subcycling stepping algorithm along with a specialized refluxing method, all unified in a highly parallel, scalable codebase. In addition, we develope a GPU-optimized low-storage explicit Runge–Kutta chemical integrator designed to minimize register usage, achieving higher efficiency than its implicit counterparts for detailed chemical kinetics with small mechanism size in high-speed combustion problems. A suite of benchmarks demonstrates the framework's high fidelity for both non-reactive and reactive simulations on both uniform and adaptively refined grids. By leveraging our parallelization strategy developed on top of AMReX, we demonstrate significant speedups on various problems using an NVIDIA V100 GPU compared to an Intel i9 CPU within the same codebase. In particular, for problems with complex physics and spatiotemporally distributed stiffness, such as hydrogen detonation propagation, we achieve an overall speedup of 6.49× with substantial computational throughput. Finally, this AMR framework is applied to a large-scale three-dimensional direct numerical simulation. Compared to prior CPU computations on a uniform grid, it yields a substantial reduction in total degrees of freedom involved in the calculation without compromising accuracy.</div></div>","PeriodicalId":285,"journal":{"name":"Computer Physics Communications","volume":"318 ","pages":"Article 109870"},"PeriodicalIF":3.4000,"publicationDate":"2025-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"An efficient GPU-accelerated adaptive mesh refinement framework for high-fidelity compressible reactive flows modeling\",\"authors\":\"Yuqi Wang , Yadong Zeng , Ralf Deiterding , Jianhan Liang\",\"doi\":\"10.1016/j.cpc.2025.109870\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>This paper presents a heterogeneous adaptive mesh refinement (AMR) framework for exascale simulations of non-stiff/moderately stiff chemical kinetics. The framework features an efficient time-subcycling stepping algorithm along with a specialized refluxing method, all unified in a highly parallel, scalable codebase. In addition, we develope a GPU-optimized low-storage explicit Runge–Kutta chemical integrator designed to minimize register usage, achieving higher efficiency than its implicit counterparts for detailed chemical kinetics with small mechanism size in high-speed combustion problems. A suite of benchmarks demonstrates the framework's high fidelity for both non-reactive and reactive simulations on both uniform and adaptively refined grids. By leveraging our parallelization strategy developed on top of AMReX, we demonstrate significant speedups on various problems using an NVIDIA V100 GPU compared to an Intel i9 CPU within the same codebase. In particular, for problems with complex physics and spatiotemporally distributed stiffness, such as hydrogen detonation propagation, we achieve an overall speedup of 6.49× with substantial computational throughput. Finally, this AMR framework is applied to a large-scale three-dimensional direct numerical simulation. Compared to prior CPU computations on a uniform grid, it yields a substantial reduction in total degrees of freedom involved in the calculation without compromising accuracy.</div></div>\",\"PeriodicalId\":285,\"journal\":{\"name\":\"Computer Physics Communications\",\"volume\":\"318 \",\"pages\":\"Article 109870\"},\"PeriodicalIF\":3.4000,\"publicationDate\":\"2025-09-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computer Physics Communications\",\"FirstCategoryId\":\"101\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0010465525003728\",\"RegionNum\":2,\"RegionCategory\":\"物理与天体物理\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer Physics Communications","FirstCategoryId":"101","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0010465525003728","RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
An efficient GPU-accelerated adaptive mesh refinement framework for high-fidelity compressible reactive flows modeling
This paper presents a heterogeneous adaptive mesh refinement (AMR) framework for exascale simulations of non-stiff/moderately stiff chemical kinetics. The framework features an efficient time-subcycling stepping algorithm along with a specialized refluxing method, all unified in a highly parallel, scalable codebase. In addition, we develope a GPU-optimized low-storage explicit Runge–Kutta chemical integrator designed to minimize register usage, achieving higher efficiency than its implicit counterparts for detailed chemical kinetics with small mechanism size in high-speed combustion problems. A suite of benchmarks demonstrates the framework's high fidelity for both non-reactive and reactive simulations on both uniform and adaptively refined grids. By leveraging our parallelization strategy developed on top of AMReX, we demonstrate significant speedups on various problems using an NVIDIA V100 GPU compared to an Intel i9 CPU within the same codebase. In particular, for problems with complex physics and spatiotemporally distributed stiffness, such as hydrogen detonation propagation, we achieve an overall speedup of 6.49× with substantial computational throughput. Finally, this AMR framework is applied to a large-scale three-dimensional direct numerical simulation. Compared to prior CPU computations on a uniform grid, it yields a substantial reduction in total degrees of freedom involved in the calculation without compromising accuracy.
期刊介绍:
The focus of CPC is on contemporary computational methods and techniques and their implementation, the effectiveness of which will normally be evidenced by the author(s) within the context of a substantive problem in physics. Within this setting CPC publishes two types of paper.
Computer Programs in Physics (CPiP)
These papers describe significant computer programs to be archived in the CPC Program Library which is held in the Mendeley Data repository. The submitted software must be covered by an approved open source licence. Papers and associated computer programs that address a problem of contemporary interest in physics that cannot be solved by current software are particularly encouraged.
Computational Physics Papers (CP)
These are research papers in, but are not limited to, the following themes across computational physics and related disciplines.
mathematical and numerical methods and algorithms;
computational models including those associated with the design, control and analysis of experiments; and
algebraic computation.
Each will normally include software implementation and performance details. The software implementation should, ideally, be available via GitHub, Zenodo or an institutional repository.In addition, research papers on the impact of advanced computer architecture and special purpose computers on computing in the physical sciences and software topics related to, and of importance in, the physical sciences may be considered.