2014-2024年中国流行人腺病毒108型的遗传分析

IF 4 3区 医学 Q1 Medicine
Jinjin Wang, Ling Jing, Yali Duan, Junhong Ai, Yun Zhu, Ran Wang, Xiangpeng Chen, Gen Lu, Yun Sun, Changchong Li, Rong Jin, Yunxiao Shang, Yixiao Bao, Shuhua An, Yunlian Zhou, Limin Ning, Baoping Xu, Yuhai Bi, Zhengde Xie
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引用次数: 0

摘要

已在包括中国在内的多个国家检测到人类腺病毒108型(HAdV-108),该病毒与儿童严重急性呼吸道感染(ARI)有关,并有死亡报告。然而,对HAdV-108的研究仍然有限。本研究旨在探讨中国ARI儿童HAdV-108的临床和遗传特征。2014 - 2024年,在中国北方和南方的10家医院收集了6720份ARI住院儿童的呼吸道样本,其中505例(7.51%)检测出hav阳性。对全基因组和3个主要衣壳蛋白基因进行扩增和生物信息学分析,结果显示,在317份hadv分离样本中,有21份(6.62%)鉴定为HAdV-108,排名第三,仅次于HAdV-114和HAdV-7。临床分析hadv -108阳性病例主要表现为咳嗽、发热。7名儿童出现胃肠道症状,2名无基础疾病的儿童被诊断为严重肺炎。全基因组序列的系统发育分析显示,国内菌株和国际菌株之间存在明显的优势流行分支,本研究获得的一个菌株形成了一个独立的分支。Hexon蛋白进化速度最快,同源性最低,氨基酸变异性最大,纤维蛋白进化速度最慢,同源性最高,保守性和稳定性最强。与最早报道的HAdV-108菌株相比,在戊基蛋白RGD环区发现了3个氨基酸缺失,可能导致结构变化。重组分析确定了五种不同的重组模式。体外实验表明,HAdV-108具有与其他C种腺病毒相当的增殖能力。综上所述,HAdV-108在中国持续流行,导致严重急性呼吸道感染和并发胃肠道症状。Cluster3是中国的优势流行分支。HAdV-108表现出显著的型内遗传变异,重组事件随机多样。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Genetic analysis of human adenovirus type 108 circulating in China during 2014-2024.

Human adenovirus type 108 (HAdV-108) has been detected in multiple countries, including China, and is associated with severe acute respiratory infection (ARI) in children, with reported fatalities. However, studies on HAdV-108 remain limited. This study aimed to investigate the clinical and genetic characteristics of HAdV-108 in ARI children in China. From 2014 to 2024, 6720 respiratory samples were collected from hospitalized children with ARI at ten hospitals across northern and southern China between 2014 and 2024, of which 505 (7.51%) tested positive for HAdV. The whole-genome and three major capsid protein genes were amplified and sequenced for bioinformatics analysis, which revealed that among 317 HAdV-isolated samples, 21 (6.62%) were identified as HAdV-108, ranking third after HAdV-114 and HAdV-7. Clinical analysis of HAdV-108-positive cases showed that the main manifestations were cough and fever. Seven children had gastrointestinal symptoms, and two children without underlying diseases were diagnosed with severe pneumonia. Phylogenetic analysis of whole-genome sequences revealed distinct predominant epidemic branches between domestic and international strains, with one strain obtained in this study forming an independent branch. Hexon protein exhibited the fastest evolution rate, lowest identity, and greatest amino acid variability, while fiber protein displayed the slowest evolution rate, highest identity, and greatest conservation and stability. Compared with the earliest reported HAdV-108 strain, three amino acid deletions were identified in the RGD loop region of penton base protein, resulting in potential structural change. Recombination analysis identified five distinct recombination patterns. In vitro experiments demonstrated that HAdV-108 had proliferation capacity comparable to other species C adenoviruses. In summary, HAdV-108 has persistently circulated in China, causing severe ARIs and concurrent gastrointestinal manifestations. Cluster3 was the predominant epidemic branch in China. HAdV-108 exhibited significant intra-type genetic variation, with random and diverse recombination events.

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来源期刊
Virologica Sinica
Virologica Sinica Biochemistry, Genetics and Molecular Biology-Molecular Medicine
CiteScore
7.70
自引率
1.80%
发文量
3149
期刊介绍: Virologica Sinica is an international journal which aims at presenting the cutting-edge research on viruses all over the world. The journal publishes peer-reviewed original research articles, reviews, and letters to the editor, to encompass the latest developments in all branches of virology, including research on animal, plant and microbe viruses. The journal welcomes articles on virus discovery and characterization, viral epidemiology, viral pathogenesis, virus-host interaction, vaccine development, antiviral agents and therapies, and virus related bio-techniques. Virologica Sinica, the official journal of Chinese Society for Microbiology, will serve as a platform for the communication and exchange of academic information and ideas in an international context. Electronic ISSN: 1995-820X; Print ISSN: 1674-0769
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