Forge4Flame:一个直观的仪表板,用于设计基于GPU代理的模型来模拟传染病的传播

IF 3.5 2区 计算机科学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Daniele Baccega , Irene Terrone , Peter Heywood , Robert Chisholm , Paul Richmond , Sandro Gepiro Contaldo , Lorenzo Bosio , Simone Pernice , Marco Beccuti
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引用次数: 0

摘要

基于代理的模型是模拟共享环境中代理之间的动态交互、行为和通信协议的计算模型。这种模型在流行病学领域的使用引起了很大的注意,可以对可能的干预措施和疫苗接种战略的有效性进行评估。然而,设置这些环境通常需要一个人工和技术过程,既耗时又复杂。为了应对这一挑战,我们引入了Forge4Flame,这是一个新颖且用户友好的仪表板,它简化了FLAME GPU 2基于代理的模型的定义。我们的目标是使更广泛的研究人员和公共卫生专业人员更容易使用这个建模框架。具体来说,该工具通过自动生成所需的FLAME GPU 2代码并结合有价值的可视化和后处理功能,简化了模型设计,执行和分析。此外,还探索了两个不同层次的种群模型的整合,从而可以详细分析疾病动态。这表明该工具有潜力通过Docker和Slurm增强基于代理的模型的可访问性和可伸缩性,从而在高性能计算系统上实现高效的分布式计算。最后,通过调查意大利一所普通中学的COVID-19紧急情况的案例研究,证明了该工具的有效性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Forge4Flame: An intuitive dashboard for designing GPU agent-based models to simulate infectious disease spread
Agent-based models are computational models that simulate the dynamic interactions, behaviours, and communication protocols among agents in a shared environment. The use of such models in the field of epidemiology has attracted much attention, allowing the evaluation of the effectiveness of possible interventions and vaccination strategies. However, setting up these environments typically requires a manual and technical process that can be both time-consuming and complex. To address this challenge, we introduce Forge4Flame, a novel and user-friendly dashboard that simplifies the definition of agent-based models for FLAME GPU 2. Our goal is to make this modelling framework more accessible to a broader audience of researchers and public health professionals. Specifically, the tool streamlines model design, execution, and analysis by automatically generating the required FLAME GPU 2 code and incorporating valuable visualisation and post-processing features. Moreover, the integration of two different levels of population model was explored, allowing a detailed analysis of disease dynamics. This shows the tool’s potential to enhance both the accessibility and scalability of agent-based models through Docker and Slurm for efficient distributed computing on high-performance computing systems. Finally, the effectiveness of this tool is demonstrated through a case study that investigates the COVID-19 emergency in a generic Italian middle school.
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来源期刊
Simulation Modelling Practice and Theory
Simulation Modelling Practice and Theory 工程技术-计算机:跨学科应用
CiteScore
9.80
自引率
4.80%
发文量
142
审稿时长
21 days
期刊介绍: The journal Simulation Modelling Practice and Theory provides a forum for original, high-quality papers dealing with any aspect of systems simulation and modelling. The journal aims at being a reference and a powerful tool to all those professionally active and/or interested in the methods and applications of simulation. Submitted papers will be peer reviewed and must significantly contribute to modelling and simulation in general or use modelling and simulation in application areas. Paper submission is solicited on: • theoretical aspects of modelling and simulation including formal modelling, model-checking, random number generators, sensitivity analysis, variance reduction techniques, experimental design, meta-modelling, methods and algorithms for validation and verification, selection and comparison procedures etc.; • methodology and application of modelling and simulation in any area, including computer systems, networks, real-time and embedded systems, mobile and intelligent agents, manufacturing and transportation systems, management, engineering, biomedical engineering, economics, ecology and environment, education, transaction handling, etc.; • simulation languages and environments including those, specific to distributed computing, grid computing, high performance computers or computer networks, etc.; • distributed and real-time simulation, simulation interoperability; • tools for high performance computing simulation, including dedicated architectures and parallel computing.
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