环境生物毒素冈田酸的网络毒理学分析与深度学习预测

IF 4.3 2区 环境科学与生态学 Q1 MARINE & FRESHWATER BIOLOGY
Dongyao Wang , Ying Zhang , Yao Yang , Yuxiao Tang , Yan Liu , Hui Shen , Xinhao Li , Lianghua Wang , Feng Lu
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引用次数: 0

摘要

本研究旨在推广网络毒理学和深度学习策略,以有效研究生物环境或食物链系统中腹泻性贝类中毒的典型代表冈田酸(OA)的潜在神经毒性分子机制。使用网络毒理学策略的K均值算法在宏观水平上确定了95个与oa相关性腹泻和神经毒性相关的枢纽靶点。更具体地说,在微观层面上使用深度学习策略的deepurpose算法识别关键靶点AKT1。网络毒理学和深度学习方法的协同整合使系统生物学和分子相互作用水平的多维互补成为可能;前者构建了全球毒性网络,而后者阐明了关键的靶点机制。这种多尺度方法提高了研究效率和机理精度。进一步通过分子对接和生物层干涉法证实了AKT1与OA的结合(INTERACTION_ENERGY =56.99 kcal/mol, KD=6.61E-11 M)。本研究为OA致腹泻相关脑损伤提供理论和相关依据,为生物环境或食源性OA暴露的治疗提供决策依据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Toxic effects of environmental biotoxin okadaic acid by network toxicology analysis and deep learning prediction
The study aims to promote a network toxicology and deep learning strategy to efficiently investigate the underlying neurotoxicity molecular mechanisms of okadaic acid (OA) , which is a typical representative of diarrhetic shellfish poisoning in bio-environmental or food chain system. 95 hub targets associated with OA-related diarrhea, and neurotoxicity were identified using K means algorithm of network toxicology strategy at the macro level. More specifically, the key target AKT1 was identified using DeepPurpose algorithm of deep learning strategy at the micro level. The synergistic integration of network toxicology and deep learning approaches enables multidimensional complementarity across systems biology and molecular interaction levels; the former constructs global toxicity networks, while the latter elucidates key target mechanisms. This multi-scale approach enhances study efficiency and mechanistic precision. Further on, molecular docking and bio-layer interferometry were conducted to confirm the binding between AKT1 and OA (INTERACTION_ENERGY =56.99 kcal/mol, KD=6.61E-11 M). This research provides a theoretical and correlational basis of OA-induced diarrhea-related brain injury, as well as establishing a decision-making for the treatment of bio-environmental or foodborne OA exposure.
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来源期刊
Aquatic Toxicology
Aquatic Toxicology 环境科学-毒理学
CiteScore
7.10
自引率
4.40%
发文量
250
审稿时长
56 days
期刊介绍: Aquatic Toxicology publishes significant contributions that increase the understanding of the impact of harmful substances (including natural and synthetic chemicals) on aquatic organisms and ecosystems. Aquatic Toxicology considers both laboratory and field studies with a focus on marine/ freshwater environments. We strive to attract high quality original scientific papers, critical reviews and expert opinion papers in the following areas: Effects of harmful substances on molecular, cellular, sub-organismal, organismal, population, community, and ecosystem level; Toxic Mechanisms; Genetic disturbances, transgenerational effects, behavioral and adaptive responses; Impacts of harmful substances on structure, function of and services provided by aquatic ecosystems; Mixture toxicity assessment; Statistical approaches to predict exposure to and hazards of contaminants The journal also considers manuscripts in other areas, such as the development of innovative concepts, approaches, and methodologies, which promote the wider application of toxicological datasets to the protection of aquatic environments and inform ecological risk assessments and decision making by relevant authorities.
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