{"title":"2- n -甲基吡咯-5-甲酰基氨基四唑光解在基态和激发态下生成腈亚胺。","authors":"Lei Zhao, , , Ye-Guang Fang, , , Bin-Bin Xie, , , Qiu Fang*, , , Haobin Wang, , and , Wei-Hai Fang*, ","doi":"10.1021/acs.jpclett.5c02521","DOIUrl":null,"url":null,"abstract":"<p >Photo-cross-linking reactions have been widely used for exploring the network of dynamic protein–protein interaction, and photolysis of cross-linker plays an extremely important role in the formation of the reactive intermediate and subsequent linking reaction. However, the detailed mechanism of the relevant reactions has been rarely reported up to date. In this work, 2-<i>N</i>-methylpyrrole-5-formylamino-tetrazole (<b>MPFT</b>) was chosen as a representative of the photo-cross-linkers developed recently. Structures and properties of <b>MPFT</b> in the three lowest-lying electronic states have been determined at the level of multistate complete active space second-order perturbation theory (MS-CASPT2). Meanwhile, the direct <i>ab initio</i> quantum trajectory mean-field (QTMF) method has been used to simulate nonadiabatic dynamics initiated from the first excited singlet state of <b>MPFT</b>. The combination of the MS-CASPT2 calculation and the QTMF simulation not only provided new insights into the mechanism of the <b>MPFT</b> photolysis but also revealed that the singlet excited-state nitrile imine is likely to be the reactive intermediate that is responsible for the cross-linking reaction with the site of target protein. Our conclusions obtained from MS-CASPT2 calculations and QTMF dynamical simulations are supported by the experimental findings.</p>","PeriodicalId":62,"journal":{"name":"The Journal of Physical Chemistry Letters","volume":"16 39","pages":"10149–10158"},"PeriodicalIF":4.6000,"publicationDate":"2025-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Formation of Nitrile Imine in the Ground and Excited States from Photolysis of 2-N-Methylpyrrole-5-formylamino-tetrazole\",\"authors\":\"Lei Zhao, , , Ye-Guang Fang, , , Bin-Bin Xie, , , Qiu Fang*, , , Haobin Wang, , and , Wei-Hai Fang*, \",\"doi\":\"10.1021/acs.jpclett.5c02521\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >Photo-cross-linking reactions have been widely used for exploring the network of dynamic protein–protein interaction, and photolysis of cross-linker plays an extremely important role in the formation of the reactive intermediate and subsequent linking reaction. However, the detailed mechanism of the relevant reactions has been rarely reported up to date. In this work, 2-<i>N</i>-methylpyrrole-5-formylamino-tetrazole (<b>MPFT</b>) was chosen as a representative of the photo-cross-linkers developed recently. Structures and properties of <b>MPFT</b> in the three lowest-lying electronic states have been determined at the level of multistate complete active space second-order perturbation theory (MS-CASPT2). Meanwhile, the direct <i>ab initio</i> quantum trajectory mean-field (QTMF) method has been used to simulate nonadiabatic dynamics initiated from the first excited singlet state of <b>MPFT</b>. The combination of the MS-CASPT2 calculation and the QTMF simulation not only provided new insights into the mechanism of the <b>MPFT</b> photolysis but also revealed that the singlet excited-state nitrile imine is likely to be the reactive intermediate that is responsible for the cross-linking reaction with the site of target protein. Our conclusions obtained from MS-CASPT2 calculations and QTMF dynamical simulations are supported by the experimental findings.</p>\",\"PeriodicalId\":62,\"journal\":{\"name\":\"The Journal of Physical Chemistry Letters\",\"volume\":\"16 39\",\"pages\":\"10149–10158\"},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2025-09-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"The Journal of Physical Chemistry Letters\",\"FirstCategoryId\":\"1\",\"ListUrlMain\":\"https://pubs.acs.org/doi/10.1021/acs.jpclett.5c02521\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"The Journal of Physical Chemistry Letters","FirstCategoryId":"1","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jpclett.5c02521","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
摘要
光交联反应被广泛用于探索蛋白质-蛋白质动态相互作用的网络,而交联剂的光解在反应中间体的形成和随后的连接反应中起着极其重要的作用。然而,相关反应的详细机理至今鲜有报道。本文选择2- n -甲基吡咯-5-甲酰基氨基四唑(MPFT)作为近年来开发的光交联剂的代表。在多态完全有源空间二阶微扰理论(MS-CASPT2)的水平上确定了MPFT在三个最低电子态上的结构和性质。同时,采用直接从头算量子轨迹平均场(QTMF)方法模拟了MPFT的第一激发单重态引发的非绝热动力学。MS-CASPT2计算和QTMF模拟的结合不仅为MPFT光解的机理提供了新的见解,而且揭示了单线态激发态腈亚胺很可能是与靶蛋白位点发生交联反应的活性中间体。我们通过MS-CASPT2计算和QTMF动力学模拟得到的结论得到了实验结果的支持。
Formation of Nitrile Imine in the Ground and Excited States from Photolysis of 2-N-Methylpyrrole-5-formylamino-tetrazole
Photo-cross-linking reactions have been widely used for exploring the network of dynamic protein–protein interaction, and photolysis of cross-linker plays an extremely important role in the formation of the reactive intermediate and subsequent linking reaction. However, the detailed mechanism of the relevant reactions has been rarely reported up to date. In this work, 2-N-methylpyrrole-5-formylamino-tetrazole (MPFT) was chosen as a representative of the photo-cross-linkers developed recently. Structures and properties of MPFT in the three lowest-lying electronic states have been determined at the level of multistate complete active space second-order perturbation theory (MS-CASPT2). Meanwhile, the direct ab initio quantum trajectory mean-field (QTMF) method has been used to simulate nonadiabatic dynamics initiated from the first excited singlet state of MPFT. The combination of the MS-CASPT2 calculation and the QTMF simulation not only provided new insights into the mechanism of the MPFT photolysis but also revealed that the singlet excited-state nitrile imine is likely to be the reactive intermediate that is responsible for the cross-linking reaction with the site of target protein. Our conclusions obtained from MS-CASPT2 calculations and QTMF dynamical simulations are supported by the experimental findings.
期刊介绍:
The Journal of Physical Chemistry (JPC) Letters is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, chemical physicists, physicists, material scientists, and engineers. An important criterion for acceptance is that the paper reports a significant scientific advance and/or physical insight such that rapid publication is essential. Two issues of JPC Letters are published each month.