少弱精子症的代谢组学分析和基于机器学习的生物标志物鉴定。

IF 3.3 3区 医学 Q2 ENDOCRINOLOGY & METABOLISM
Jinli Li, Tangzhen Zhao, Mengmeng Ma, Pengcheng Kong, Yuping Fan, Xiaoming Teng, Yi Guo
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引用次数: 0

摘要

前言和目的:精子少弱症,以精子数量少和进行性运动障碍为特征,是男性不育的重要原因。本研究利用超高效液相色谱-四极杆飞行时间质谱(UPLC-Q-TOF/MS)检测了少弱精子症患者(n = 30)和健康对照组(n = 30)之间的代谢差异。方法:在正离子模式下鉴定出1331种代谢物,在负离子模式下鉴定出870种代谢物,通过差异分析发现两组间有211种代谢物存在显著差异。途径分析确定了关键的代谢途径,包括戊糖磷酸途径、TCA循环、甘油磷脂代谢和脂肪酸代谢。随后,采用各种机器学习模型,包括Logistic回归(LR)、随机森林(RF)和支持向量机(SVM)来评估鉴定的代谢物的预测能力,其中1-棕榈酰-2-二十二碳六烯酰- asn -甘油-3-磷脂胆碱和[6]-姜辣素的预测性能最高。结果:使用LR建立的诊断模型具有较高的灵敏度(0.93)、特异性(1)和准确性(0.97),训练集的AUC为0.998,测试集的AUC为0.963。结论:这些发现为了解与少弱精子症相关的代谢变化提供了重要的见解,并为将其与对照组区分开来建立了可靠的诊断框架。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Metabolomic profiling and machine learning-based biomarker identification for oligoasthenozoospermia.

Introduction and objectives: Oligoasthenozoospermia, characterized by a low sperm count and impaired progressive motility, significantly contributes to male infertility. This study examines the metabolic disparities between individuals with oligoasthenozoospermia (n = 30) and healthy controls (n = 30) utilizing ultra-high-performance liquid chromatography-quadrupole time-of-flight mass spectrometry (UPLC-Q-TOF/MS).

Methods: A total of 1,331 metabolites were identified in positive ion mode and 870 in negative ion mode, with differential analysis indicating 211 significantly different metabolites between the two groups. Pathway analysis identified key metabolic pathways, including the pentose phosphate pathway, TCA cycle, glycerophospholipid metabolism, and fatty acid metabolism. Subsequently, various machine learning models, including Logistic Regression (LR), Random Forest (RF), and Support Vector Machine (SVM) were employed to assess the predictive capability of the identified metabolites, with 1-palmitoyl-2-docosahexaenoyl-sn-glycero-3-phosphocholine and [6]-gingerol demonstrating the highest predictive performance.

Results: The diagnostic model, developed using LR, attained high sensitivity (0.93), specificity (1), and accuracy (0.97), with an AUC of 0.998 in the training set and 0.963 in the test set.

Conclusion: These findings offer critical insights into the metabolic changes associated with oligoasthenozoospermia and establish a dependable diagnostic framework for differentiating it from controls.

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来源期刊
Metabolomics
Metabolomics 医学-内分泌学与代谢
CiteScore
6.60
自引率
2.80%
发文量
84
审稿时长
2 months
期刊介绍: Metabolomics publishes current research regarding the development of technology platforms for metabolomics. This includes, but is not limited to: metabolomic applications within man, including pre-clinical and clinical pharmacometabolomics for precision medicine metabolic profiling and fingerprinting metabolite target analysis metabolomic applications within animals, plants and microbes transcriptomics and proteomics in systems biology Metabolomics is an indispensable platform for researchers using new post-genomics approaches, to discover networks and interactions between metabolites, pharmaceuticals, SNPs, proteins and more. Its articles go beyond the genome and metabolome, by including original clinical study material together with big data from new emerging technologies.
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