Xuan Zhou, Yifei Sun, Qian Yang, Hong Li, Yanxia Jiang, Fenggang Xiang, Ting Liu
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Furthermore, the study explored the association between EIF5A2 expression and various clinicopathological parameters, along with its prognostic implications. Spearman correlation analysis was used to estimate the relationship between EIF5A2 expression and tumor mutation burden (TMB), microsatellite instability (MSI), and immunologic features. \"pRRophetic\"R package was utilized to obtain the sensitivity of common drugs. The Gene Set Enrichment Analysis (GSEA) was used to study the functional enrichment analysis of EIF5A2-related genes. EIF5A2 was overexpressed in most tumors using TCGA and GTEx databases. Cox regression analysis demonstrated that high EIF5A2 expression was associated with unfavorable overall survival (OS) and disease-specific survival (DSS) in head and neck squamous cell carcinoma (HNSC), brain lower grade glioma (LGG), and LIHC. The frequency of EIF5A2 gene alterations was the highest in lung squamous cell carcinoma (LUSC). EIF5A2 expression was associated with TMB, MSI, and immune cell infiltration in some tumors. We performed IHC and qRT-PCR to evaluate EIF5A2 expression in HCC and normal tissues, and found upregulation of EIF5A2 expression at the mRNA and protein levels in LIHC. There was a correlation between EIF5A2 expression and tumor size, tumor grade, and TNM stage in LIHC. Kaplan-Meier survival suggested that the overexpression EIF5A2 group had unfavorable outcomes in LIHC. EIF5A2 expression was correlated with immune cell infiltration in LIHC. The high EIF5A2 expression group was more sensitive to cisplatin, crizontinib, gemcitabine, and nilotinib in LIHC. High EIF5A2 expression was associated with several pathways, including cell cycle, proteasome, DNA replication, primary immunodeficiency and oocyte meiosis. 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引用次数: 0
摘要
EIF5A2是EIF家族的关键成员,其在泛癌中的作用和机制尚未得到广泛研究。通过TCGA和GTEx分析EIF5A2在肿瘤和正常组织中的表达差异。使用cBioportal来研究肿瘤中EIF5A2的基因改变。我们采用Cox回归和Kaplan-Meier分析探讨EIF5A2表达对预后的影响。采用实时荧光定量PCR (qRT-PCR)检测12例新鲜肝细胞癌(LIHC)及相应癌旁非肿瘤组织中EIF5A2 mRNA水平。采用免疫组化(IHC)方法评价284例LIHC及邻近非肿瘤组织中EIF5A2的表达水平。此外,该研究探讨了EIF5A2表达与各种临床病理参数之间的关系,以及其预后意义。采用Spearman相关分析估计EIF5A2表达与肿瘤突变负荷(TMB)、微卫星不稳定性(MSI)和免疫特征之间的关系。采用“prorophetic”R包装获得常见药物的敏感性。采用基因集富集分析(Gene Set Enrichment Analysis, GSEA)对eif5a2相关基因进行功能富集分析。根据TCGA和GTEx数据库,EIF5A2在大多数肿瘤中过表达。Cox回归分析显示,在头颈部鳞状细胞癌(HNSC)、脑低级别胶质瘤(LGG)和LIHC中,EIF5A2高表达与不利的总生存(OS)和疾病特异性生存(DSS)相关。EIF5A2基因的改变频率在肺鳞癌(LUSC)中最高。在某些肿瘤中,EIF5A2的表达与TMB、MSI和免疫细胞浸润有关。我们通过免疫组化和qRT-PCR检测了EIF5A2在HCC和正常组织中的表达,发现在肝癌组织中EIF5A2 mRNA和蛋白水平表达上调。在LIHC中,EIF5A2的表达与肿瘤大小、肿瘤分级和TNM分期相关。Kaplan-Meier生存率表明,过表达EIF5A2组在LIHC中有不利的结果。EIF5A2表达与LIHC免疫细胞浸润相关。在LIHC中,EIF5A2高表达组对顺铂、克里唑替尼、吉西他滨和尼罗替尼更敏感。EIF5A2高表达与细胞周期、蛋白酶体、DNA复制、原发性免疫缺陷和卵母细胞减数分裂等多种途径相关。EIF5A2可能作为潜在的预后标志物和癌症免疫治疗的潜在焦点。
EIF5A2 acts as a potential marker for prognosis and immunity in human cancers.
EIF5A2, a key member of the EIF family, has not been extensively studied regarding its role and mechanism in pan-cancer. TCGA and GTEx analyses were performed to investigate the differential expression of EIF5A2 in tumors and normal tissues. cBioportal was used to investigate the gene alterations of EIF5A2 in tumors. We used Cox regression and Kaplan-Meier analyses to discuss the impact of EIF5A2 expression on prognosis. Quantitative real-time PCR (qRT-PCR) was used to detect EIF5A2 mRNA levels in 12 cases of fresh liver hepatocellular carcinoma (LIHC) and corresponding adjacent non-tumor tissues. Immunohistochemistry (IHC) was employed to evaluate the expression levels of EIF5A2 in 284 cases of LIHC as well as in adjacent non-tumorous tissues. Furthermore, the study explored the association between EIF5A2 expression and various clinicopathological parameters, along with its prognostic implications. Spearman correlation analysis was used to estimate the relationship between EIF5A2 expression and tumor mutation burden (TMB), microsatellite instability (MSI), and immunologic features. "pRRophetic"R package was utilized to obtain the sensitivity of common drugs. The Gene Set Enrichment Analysis (GSEA) was used to study the functional enrichment analysis of EIF5A2-related genes. EIF5A2 was overexpressed in most tumors using TCGA and GTEx databases. Cox regression analysis demonstrated that high EIF5A2 expression was associated with unfavorable overall survival (OS) and disease-specific survival (DSS) in head and neck squamous cell carcinoma (HNSC), brain lower grade glioma (LGG), and LIHC. The frequency of EIF5A2 gene alterations was the highest in lung squamous cell carcinoma (LUSC). EIF5A2 expression was associated with TMB, MSI, and immune cell infiltration in some tumors. We performed IHC and qRT-PCR to evaluate EIF5A2 expression in HCC and normal tissues, and found upregulation of EIF5A2 expression at the mRNA and protein levels in LIHC. There was a correlation between EIF5A2 expression and tumor size, tumor grade, and TNM stage in LIHC. Kaplan-Meier survival suggested that the overexpression EIF5A2 group had unfavorable outcomes in LIHC. EIF5A2 expression was correlated with immune cell infiltration in LIHC. The high EIF5A2 expression group was more sensitive to cisplatin, crizontinib, gemcitabine, and nilotinib in LIHC. High EIF5A2 expression was associated with several pathways, including cell cycle, proteasome, DNA replication, primary immunodeficiency and oocyte meiosis. EIF5A2 may serve as a potential prognostic marker and a latent focus for cancer immunological treatment.
3 BiotechAgricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
CiteScore
6.00
自引率
0.00%
发文量
314
期刊介绍:
3 Biotech publishes the results of the latest research related to the study and application of biotechnology to:
- Medicine and Biomedical Sciences
- Agriculture
- The Environment
The focus on these three technology sectors recognizes that complete Biotechnology applications often require a combination of techniques. 3 Biotech not only presents the latest developments in biotechnology but also addresses the problems and benefits of integrating a variety of techniques for a particular application. 3 Biotech will appeal to scientists and engineers in both academia and industry focused on the safe and efficient application of Biotechnology to Medicine, Agriculture and the Environment.