探究喹诺啉酮衍生物中C = C环和酰胺i模式之间的分子内振动耦合:来自DFT和分子动力学模拟的见解。

IF 2.8 2区 化学 Q3 CHEMISTRY, PHYSICAL
Sudipta Saha, , , Suranjana Chakrabarty, , , Basudha Deb, , , Shreya Raha, , , Amit Kumar Paul*, , and , Anup Ghosh*, 
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引用次数: 0

摘要

振动耦合是红外光谱的固有组成部分。振动模式之间的耦合对能量传递至关重要,并可能导致分子动力学中峰值位置、强度和扰动的改变。在大多数生物分子中,酰胺i模式(C = O)已经得到了高度的研究。由于在更近的频率区域中存在其他扰动模式,例如C = C振动模式,关于观测模式获得的数据可能不精确。C = C和酰胺i模式可以参与分子间和分子内的振动耦合。分子内振动耦合是分子的固有特性。为了研究对称/不对称C = C环和酰胺- i模式之间分子内振动耦合的影响,我们使用DFT对三个喹诺啉酮基的融合环衍生物进行了理论计算。我们观察到其中一个系统的对称/非对称环和酰胺- i模式之间存在振动耦合,但在其他系统中只有非对称环和酰胺- i模式耦合。这一观察结果也通过使用正模哈密顿量进行的分子动力学模拟得到验证,其中酰胺i模式的能量与对称和不对称C = C环模式的能量一起被监测。这种耦合行为的差异是由于各自模态的位置取向的差异。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Probing Intramolecular Vibrational Coupling between the C═C Ring and Amide-I Modes in Quinolinone Derivatives: Insights from DFT and Molecular Dynamics Simulations

Probing Intramolecular Vibrational Coupling between the C═C Ring and Amide-I Modes in Quinolinone Derivatives: Insights from DFT and Molecular Dynamics Simulations

Vibrational coupling is an intrinsic component of IR spectroscopy. Coupling between vibrating modes is crucial for energy transfer and may result in alterations in peak position, intensity, and perturbations in molecular dynamics. In most biomolecules, the amide-I mode (C═O) has been highly studied. The data obtained regarding the observed mode may not be precise due to other perturbing modes present in a closer frequency region, such as the C═C vibrating mode. The C═C and amide-I modes can engage in inter- and intramolecular vibrational coupling. Intramolecular vibrational coupling is an inherent property of molecules. To investigate the influence of intramolecular vibrational coupling between symmetric/asymmetric C═C rings and amide-I modes, we have performed theoretical calculations using DFT on three quinolinone-based fused ring derivatives. We observed that vibrational coupling is present between both symmetric/asymmetric rings and the amide-I mode for one of the systems, but only the asymmetric vibrational ring and amide-I modes couple in the case of the others. This observation is also validated through a molecular dynamics simulation performed using a normal-mode Hamiltonian, where the energies in the amide-I mode are monitored along with the symmetric and asymmetric C═C ring modes. This disparity in the coupling behavior is due to the difference in the positional orientations of the respective modes.

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来源期刊
The Journal of Physical Chemistry A
The Journal of Physical Chemistry A 化学-物理:原子、分子和化学物理
CiteScore
5.20
自引率
10.30%
发文量
922
审稿时长
1.3 months
期刊介绍: The Journal of Physical Chemistry A is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.
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