{"title":"快速VPCR与核酸侧流免疫分析法(NALFIA)联合快速检测假中间葡萄球菌和凝固葡萄球菌。","authors":"Ananda Chitra Murugesan, Kaviya Karthikeyan, Nivedita Jeyaraja, Pavithraa Damodaran, Karthik Raj Bodepogu Nandagopal, Anju Anil, Tirumurugaan Krishnaswamy Gopalan","doi":"10.1016/j.mimet.2025.107254","DOIUrl":null,"url":null,"abstract":"<div><div>In dogs, pyoderma is primarily caused by coagulase-positive <em>Staphylococcus pseudintermedius</em> (SP)<em>, S. coagulans</em> (SC) and <em>S. aureus</em> (SA). Standard culture and biochemical methods for identifying these organisms are laborious, and potential misidentification is a possibility. Molecular methods, like PCR, are a viable alternative for early and accurate diagnosis of these organisms. In this study, we collected 83 swab samples from pyoderma cases of dogs and compared the sensitivity and specificity of the fast VPCR in conventional agarose gel electrophoresis with Nucleic Acid Lateral Flow Immunoassay (NALFIA) in detecting SP and SC. Bacterial DNA was extracted by a simple and quick NaOH lysis method. Primers targeting the <em>rodA</em> gene of SC and the <em>spsK</em> gene of SP were used in PCR, and labelled primers of the same genes were used in NALFIA. The limit of detection of SP and SC in VPCR with gel electrophoresis was 10<sup>2</sup> CFU/ml and 10<sup>4</sup> CFU/ml for NALFIA. Though VPCR with gel electrophoresis was found to be more sensitive than NALFIA, it required specialized equipment like agarose gel electrophoretic apparatus with power pack and gel documentation system and carcinogenic ethidium bromide dye for detection of the bands in agarose gel. The VPCR, combined with NALFIA, offers sensitive and reliable detection of these bacteria in 45 min, even to the naked eye. The simplicity, portability, and cost-effectiveness of the NALFIA make them particularly suitable for resource-limited settings and point-of-care testing.</div></div>","PeriodicalId":16409,"journal":{"name":"Journal of microbiological methods","volume":"238 ","pages":"Article 107254"},"PeriodicalIF":1.9000,"publicationDate":"2025-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Rapid detection of Staphylococcus pseudintermedius and Staphylococcus coagulans by combining fast VPCR with nucleic acid lateral flow immunoassay (NALFIA)\",\"authors\":\"Ananda Chitra Murugesan, Kaviya Karthikeyan, Nivedita Jeyaraja, Pavithraa Damodaran, Karthik Raj Bodepogu Nandagopal, Anju Anil, Tirumurugaan Krishnaswamy Gopalan\",\"doi\":\"10.1016/j.mimet.2025.107254\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>In dogs, pyoderma is primarily caused by coagulase-positive <em>Staphylococcus pseudintermedius</em> (SP)<em>, S. coagulans</em> (SC) and <em>S. aureus</em> (SA). Standard culture and biochemical methods for identifying these organisms are laborious, and potential misidentification is a possibility. Molecular methods, like PCR, are a viable alternative for early and accurate diagnosis of these organisms. In this study, we collected 83 swab samples from pyoderma cases of dogs and compared the sensitivity and specificity of the fast VPCR in conventional agarose gel electrophoresis with Nucleic Acid Lateral Flow Immunoassay (NALFIA) in detecting SP and SC. Bacterial DNA was extracted by a simple and quick NaOH lysis method. Primers targeting the <em>rodA</em> gene of SC and the <em>spsK</em> gene of SP were used in PCR, and labelled primers of the same genes were used in NALFIA. The limit of detection of SP and SC in VPCR with gel electrophoresis was 10<sup>2</sup> CFU/ml and 10<sup>4</sup> CFU/ml for NALFIA. Though VPCR with gel electrophoresis was found to be more sensitive than NALFIA, it required specialized equipment like agarose gel electrophoretic apparatus with power pack and gel documentation system and carcinogenic ethidium bromide dye for detection of the bands in agarose gel. The VPCR, combined with NALFIA, offers sensitive and reliable detection of these bacteria in 45 min, even to the naked eye. The simplicity, portability, and cost-effectiveness of the NALFIA make them particularly suitable for resource-limited settings and point-of-care testing.</div></div>\",\"PeriodicalId\":16409,\"journal\":{\"name\":\"Journal of microbiological methods\",\"volume\":\"238 \",\"pages\":\"Article 107254\"},\"PeriodicalIF\":1.9000,\"publicationDate\":\"2025-09-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of microbiological methods\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0167701225001708\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of microbiological methods","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0167701225001708","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
Rapid detection of Staphylococcus pseudintermedius and Staphylococcus coagulans by combining fast VPCR with nucleic acid lateral flow immunoassay (NALFIA)
In dogs, pyoderma is primarily caused by coagulase-positive Staphylococcus pseudintermedius (SP), S. coagulans (SC) and S. aureus (SA). Standard culture and biochemical methods for identifying these organisms are laborious, and potential misidentification is a possibility. Molecular methods, like PCR, are a viable alternative for early and accurate diagnosis of these organisms. In this study, we collected 83 swab samples from pyoderma cases of dogs and compared the sensitivity and specificity of the fast VPCR in conventional agarose gel electrophoresis with Nucleic Acid Lateral Flow Immunoassay (NALFIA) in detecting SP and SC. Bacterial DNA was extracted by a simple and quick NaOH lysis method. Primers targeting the rodA gene of SC and the spsK gene of SP were used in PCR, and labelled primers of the same genes were used in NALFIA. The limit of detection of SP and SC in VPCR with gel electrophoresis was 102 CFU/ml and 104 CFU/ml for NALFIA. Though VPCR with gel electrophoresis was found to be more sensitive than NALFIA, it required specialized equipment like agarose gel electrophoretic apparatus with power pack and gel documentation system and carcinogenic ethidium bromide dye for detection of the bands in agarose gel. The VPCR, combined with NALFIA, offers sensitive and reliable detection of these bacteria in 45 min, even to the naked eye. The simplicity, portability, and cost-effectiveness of the NALFIA make them particularly suitable for resource-limited settings and point-of-care testing.
期刊介绍:
The Journal of Microbiological Methods publishes scholarly and original articles, notes and review articles. These articles must include novel and/or state-of-the-art methods, or significant improvements to existing methods. Novel and innovative applications of current methods that are validated and useful will also be published. JMM strives for scholarship, innovation and excellence. This demands scientific rigour, the best available methods and technologies, correctly replicated experiments/tests, the inclusion of proper controls, calibrations, and the correct statistical analysis. The presentation of the data must support the interpretation of the method/approach.
All aspects of microbiology are covered, except virology. These include agricultural microbiology, applied and environmental microbiology, bioassays, bioinformatics, biotechnology, biochemical microbiology, clinical microbiology, diagnostics, food monitoring and quality control microbiology, microbial genetics and genomics, geomicrobiology, microbiome methods regardless of habitat, high through-put sequencing methods and analysis, microbial pathogenesis and host responses, metabolomics, metagenomics, metaproteomics, microbial ecology and diversity, microbial physiology, microbial ultra-structure, microscopic and imaging methods, molecular microbiology, mycology, novel mathematical microbiology and modelling, parasitology, plant-microbe interactions, protein markers/profiles, proteomics, pyrosequencing, public health microbiology, radioisotopes applied to microbiology, robotics applied to microbiological methods,rumen microbiology, microbiological methods for space missions and extreme environments, sampling methods and samplers, soil and sediment microbiology, transcriptomics, veterinary microbiology, sero-diagnostics and typing/identification.