韩国高级别浆液性卵巢癌的综合转录组学分析。

IF 3.7 2区 生物学 Q1 GENETICS & HEREDITY
PLoS Genetics Pub Date : 2025-09-15 eCollection Date: 2025-09-01 DOI:10.1371/journal.pgen.1011660
Hyondeog Kim, Youngwook Kim, Juyeong Park, Dong-Min Shin, Ji Hyun Kim, Madhawa Gunathilake, So Young Kwon, Junyoung Shin, Chong Woo Yoo, Sang-Yoon Park, Myong Cheol Lim, Jeongseon Kim
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引用次数: 0

摘要

高级别浆液性卵巢癌(HGSOC)是卵巢癌的主要亚型,其特点是铂基化疗后复发率高。在此,我们使用下一代测序技术对111个韩国HGSOC样本进行了全面分析,以阐明其转录组景观。我们的研究发现卵巢癌存在四种不同的转录亚型:免疫反应型、间充质型、增殖型和分化型,这与TCGA HGSOC转录亚群相当。每个亚型都表现出独特的相关网络,它们的免疫细胞组成是通过计算确定的。值得注意的是,即使在所有实体癌类型的背景下,免疫反应性簇也显示出最高的免疫评分,并伴有CD4+和CD8+ T细胞的表达升高(P
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Integrative transcriptomic analysis of Korean high-grade serous ovarian cancer.

High-grade serous ovarian cancer (HGSOC) is the predominant subtype of ovarian cancer and is characterized by a high rate of relapse after platinum-based chemotherapy. Herein, we present a comprehensive analysis of 111 Korean HGSOC samples using next-generation sequencing technology to elucidate their transcriptomic landscapes. Our investigation revealed the existence of four distinct transcriptional subtypes of ovarian cancer: immunoreactive, mesenchymal, proliferative, and differentiated, which is comparable to those of TCGA HGSOC transcriptional subgroups. Each subtype exhibited unique correlation networks and their immune cell composition was computationally determined. Notably, the immunoreactive cluster displayed the highest immune score, even in the context of pan solid-cancer types, accompanied by heightened expression of CD4+ and CD8+ T cells (P < 0.05), along with notable associations with neutrophil degranulation and antigen presentation pathways (FDR < 0.01). Conversely, the differentiated cluster demonstrated immunodepleted characteristics, featuring an elevated proportion of overexpressed cancer-germline antigens. We also identified several cancer-germline HGSOC antigens that could be further investigated as potential targets for immunological intervention in cancer.

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来源期刊
PLoS Genetics
PLoS Genetics GENETICS & HEREDITY-
自引率
2.20%
发文量
438
期刊介绍: PLOS Genetics is run by an international Editorial Board, headed by the Editors-in-Chief, Greg Barsh (HudsonAlpha Institute of Biotechnology, and Stanford University School of Medicine) and Greg Copenhaver (The University of North Carolina at Chapel Hill). Articles published in PLOS Genetics are archived in PubMed Central and cited in PubMed.
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