文献计量学引导的网络药理学和转录组学对山奈酚抗肝纤维化机制的多维分析。

IF 3.9 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Frontiers in Molecular Biosciences Pub Date : 2025-08-29 eCollection Date: 2025-01-01 DOI:10.3389/fmolb.2025.1607103
Jiali Liu, Xiaowen Song, Xinni Song, Xinyue Fu, Shufang Niu, Hong Chang, Songli Shi, Meiqing Yang, Ruiqi Zhao, Peng Wang, Jun Qi, Wanfu Bai
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引用次数: 0

摘要

肝纤维化(HF)是一种由持续肝损伤引发的病理性重塑过程,其特征是细胞外基质(ECM)的过度积累,导致肝功能逐渐恶化,并增加发展为肝硬化和肝功能衰竭的可能性。方法:本研究采用系统药理学方法,初步采用文献计量学分析来鉴定具有潜在抗心衰特性的中药配方和单个草药。随后,进行多维网络分析,精确定位核心有效成分。实验研究包括构建四氯化碳(CCl4)诱导的大鼠肝纤维化模型,并辅以转录组学技术,系统地阐明中药有效成分的作用机制。结果:本研究通过文献计量学分析和网络药理学相结合的方法,从中药和中药方剂中筛选出具有抗纤维化作用的主要活性化合物山奈酚(KA)。包括病理切片分析在内的药效学评估表明,KA有效地缓解了纤维化过程,减少了胶原沉积。ELISA实验进一步证实山奈酚具有明显的抗纤维化作用,抑制炎症反应,恢复肝功能指标,改善肝纤维化进展。机制研究表明,KA通过调节SCD、SCD2、FADS2、CYP4A8等关键代谢酶基因的表达,调节脂肪酸代谢、视黄醇代谢和花生四烯酸代谢,并显著影响PPAR信号通路的活性。此外,它还能影响脂质代谢和炎症反应途径的失调,显著抑制肝星状细胞(HSC)的活化,减少ECM的积累。讨论:这一发现阐明了KA通过多靶点调控减弱HF的机制,为基于代谢重编程的治疗策略提供了具有翻译价值的理论基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Bibliometrics-guided cyberpharmacology and transcriptomics for multidimensional analysis of the antihepatic fibrosis mechanism of kaempferol.

Introduction: Hepatic Fibrosis (HF), a pathological remodeling process triggered by persistent liver damage, is marked by the excessive buildup of extracellular matrix (ECM), leading to a gradual deterioration of liver function and an increased likelihood of advancing to cirrhosis and liver failure.

Methods: This study adopts a systematic pharmacology methodology, initially employing bibliometric analysis to identify traditional Chinese medicine (TCM) formulations and individual herbs with potential anti-HF properties. Subsequently, a multi-dimensional network analysis is conducted to pinpoint core active components. Experimental investigations involve the construction of a carbon tetrachloride (CCl4)-induced rat model of liver fibrosis, complemented by transcriptomic technology to systematically elucidate the mechanisms of action of the active components in TCM.

Results: In this study, kaempferol (KA), identified as the principal active compound with anti-fibrotic properties, was selected from traditional Chinese medicine (TCM) and TCM prescriptions through a combination of bibliometric analysis and network pharmacology. Pharmacodynamic evaluations, including pathological section analyses, demonstrated that KA effectively mitigated the fibrotic process and decreased collagen deposition. Further corroborated by ELISA experiments, kaempferol exhibited pronounced anti-fibrotic effects, inhibited inflammatory responses, restored liver function indices, and ameliorated the progression of liver fibrosis. Mechanistic investigations revealed that KA modulated fatty acid metabolism, retinol metabolism, and arachidonic acid metabolism by regulating the expression of key metabolic enzyme genes such as SCD, SCD2, FADS2, and CYP4A8, and significantly influenced the activity of the PPAR signaling pathway. Additionally, it impacted the dysregulation of lipid metabolism and inflammatory response pathways, significantly inhibited hepatic stellate cell (HSC) activation, and reduced ECM accumulation.

Discussion: This finding elucidates the mechanism by which KA attenuates HF through multi-target regulation, and provides a theoretical basis for metabolic reprogramming-based therapeutic strategies with translational valu.

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来源期刊
Frontiers in Molecular Biosciences
Frontiers in Molecular Biosciences Biochemistry, Genetics and Molecular Biology-Biochemistry
CiteScore
7.20
自引率
4.00%
发文量
1361
审稿时长
14 weeks
期刊介绍: Much of contemporary investigation in the life sciences is devoted to the molecular-scale understanding of the relationships between genes and the environment — in particular, dynamic alterations in the levels, modifications, and interactions of cellular effectors, including proteins. Frontiers in Molecular Biosciences offers an international publication platform for basic as well as applied research; we encourage contributions spanning both established and emerging areas of biology. To this end, the journal draws from empirical disciplines such as structural biology, enzymology, biochemistry, and biophysics, capitalizing as well on the technological advancements that have enabled metabolomics and proteomics measurements in massively parallel throughput, and the development of robust and innovative computational biology strategies. We also recognize influences from medicine and technology, welcoming studies in molecular genetics, molecular diagnostics and therapeutics, and nanotechnology. Our ultimate objective is the comprehensive illustration of the molecular mechanisms regulating proteins, nucleic acids, carbohydrates, lipids, and small metabolites in organisms across all branches of life. In addition to interesting new findings, techniques, and applications, Frontiers in Molecular Biosciences will consider new testable hypotheses to inspire different perspectives and stimulate scientific dialogue. The integration of in silico, in vitro, and in vivo approaches will benefit endeavors across all domains of the life sciences.
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