{"title":"从荔枝根际土壤中分离到的两种新细菌——运动黄杆菌和嗜黄杆菌。","authors":"Yijie Dong, Xing Wang, Yang Liu, Guang-Da Feng, Qing Yao, Honghui Zhu","doi":"10.1099/ijsem.0.006908","DOIUrl":null,"url":null,"abstract":"<p><p>Two aerobic, Gram-stain-negative, gliding motility and rod-shaped bacterial strains, designated as B11<sup>T</sup> and D4<sup>T</sup>, were isolated from rhizosphere soil of Litchi (<i>Litchi chinensis</i> Sonn.) in Guangzhou, Guangdong Province, P.R. China. Phylogenetic analysis based on the 16S rRNA gene sequences showed that strains B11<sup>T</sup> and D4<sup>T</sup> belonged to the genus <i>Flavobacterium</i> and shared the highest similarity to <i>Flavobacterium ginsenosidimutans</i> THG 01<sup>T</sup> (98.2%) and <i>Flavobacterium daemonensis</i> JCM 19455<sup>T</sup> (98.0%), respectively. The DNA G+C contents of strains B11<sup>T</sup> and D4<sup>T</sup> were 33.9 and 34.1 mol%, respectively. Both the genome-derived average nucleotide identity and digital DNA-DNA hybridization values between the two strains and their closely related type species <i>Flavobacterium sharifuzzamanii</i> KCTC 62405<sup>T</sup> and <i>Flavobacterium denitrificans</i> DSM 15936<sup>T</sup> were below 39.3 and 90.5%, respectively. They all took iso-C<sub>15:0</sub> and summed feature 3 (C<sub>16:1</sub> <i>ω</i>6<i>c</i> and/or C<sub>16:1</sub> <i>ω</i>7<i>c</i>) as the major fatty acids. The polar lipids of strain B11<sup>T</sup> contained phosphatidylethanolamine (PE), two unidentified aminophospholipids (APL1-2) and four unidentified lipids (L1-4), while strain D4<sup>T</sup> took phosphatidylethanolamine (PE), three aminophospholipids (APL1-3) and four unidentified lipids (L1-4). Menaquinone-6 was their predominant quinone. Based on the phenotypic, chemotaxonomic, phylogenetic and genomic analyses, strains B11<sup>T</sup> and D4<sup>T</sup> should be considered as two novel species of the genus <i>Flavobacterium</i>, for which the names <i>Flavobacterium movens</i> (type strain B11<sup>T</sup>=GDMCC 1.4103<sup>T</sup>=JCM 36423<sup>T</sup>) and <i>Flavobacterium mesophilum</i> (type strain D4<sup>T</sup>=GDMCC 1.4105<sup>T</sup>=JCM 36424<sup>T</sup>) are proposed.</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"75 9","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>Flavobacterium movens</i> sp. nov. and <i>Flavobacterium mesophilum</i> sp. nov., two novel bacteria isolated from rhizosphere soil of Litchi (<i>Litchi chinensis</i> Sonn.).\",\"authors\":\"Yijie Dong, Xing Wang, Yang Liu, Guang-Da Feng, Qing Yao, Honghui Zhu\",\"doi\":\"10.1099/ijsem.0.006908\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Two aerobic, Gram-stain-negative, gliding motility and rod-shaped bacterial strains, designated as B11<sup>T</sup> and D4<sup>T</sup>, were isolated from rhizosphere soil of Litchi (<i>Litchi chinensis</i> Sonn.) in Guangzhou, Guangdong Province, P.R. China. Phylogenetic analysis based on the 16S rRNA gene sequences showed that strains B11<sup>T</sup> and D4<sup>T</sup> belonged to the genus <i>Flavobacterium</i> and shared the highest similarity to <i>Flavobacterium ginsenosidimutans</i> THG 01<sup>T</sup> (98.2%) and <i>Flavobacterium daemonensis</i> JCM 19455<sup>T</sup> (98.0%), respectively. The DNA G+C contents of strains B11<sup>T</sup> and D4<sup>T</sup> were 33.9 and 34.1 mol%, respectively. Both the genome-derived average nucleotide identity and digital DNA-DNA hybridization values between the two strains and their closely related type species <i>Flavobacterium sharifuzzamanii</i> KCTC 62405<sup>T</sup> and <i>Flavobacterium denitrificans</i> DSM 15936<sup>T</sup> were below 39.3 and 90.5%, respectively. They all took iso-C<sub>15:0</sub> and summed feature 3 (C<sub>16:1</sub> <i>ω</i>6<i>c</i> and/or C<sub>16:1</sub> <i>ω</i>7<i>c</i>) as the major fatty acids. The polar lipids of strain B11<sup>T</sup> contained phosphatidylethanolamine (PE), two unidentified aminophospholipids (APL1-2) and four unidentified lipids (L1-4), while strain D4<sup>T</sup> took phosphatidylethanolamine (PE), three aminophospholipids (APL1-3) and four unidentified lipids (L1-4). Menaquinone-6 was their predominant quinone. Based on the phenotypic, chemotaxonomic, phylogenetic and genomic analyses, strains B11<sup>T</sup> and D4<sup>T</sup> should be considered as two novel species of the genus <i>Flavobacterium</i>, for which the names <i>Flavobacterium movens</i> (type strain B11<sup>T</sup>=GDMCC 1.4103<sup>T</sup>=JCM 36423<sup>T</sup>) and <i>Flavobacterium mesophilum</i> (type strain D4<sup>T</sup>=GDMCC 1.4105<sup>T</sup>=JCM 36424<sup>T</sup>) are proposed.</p>\",\"PeriodicalId\":14390,\"journal\":{\"name\":\"International journal of systematic and evolutionary microbiology\",\"volume\":\"75 9\",\"pages\":\"\"},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2025-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International journal of systematic and evolutionary microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006908\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International journal of systematic and evolutionary microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006908","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Flavobacterium movens sp. nov. and Flavobacterium mesophilum sp. nov., two novel bacteria isolated from rhizosphere soil of Litchi (Litchi chinensis Sonn.).
Two aerobic, Gram-stain-negative, gliding motility and rod-shaped bacterial strains, designated as B11T and D4T, were isolated from rhizosphere soil of Litchi (Litchi chinensis Sonn.) in Guangzhou, Guangdong Province, P.R. China. Phylogenetic analysis based on the 16S rRNA gene sequences showed that strains B11T and D4T belonged to the genus Flavobacterium and shared the highest similarity to Flavobacterium ginsenosidimutans THG 01T (98.2%) and Flavobacterium daemonensis JCM 19455T (98.0%), respectively. The DNA G+C contents of strains B11T and D4T were 33.9 and 34.1 mol%, respectively. Both the genome-derived average nucleotide identity and digital DNA-DNA hybridization values between the two strains and their closely related type species Flavobacterium sharifuzzamanii KCTC 62405T and Flavobacterium denitrificans DSM 15936T were below 39.3 and 90.5%, respectively. They all took iso-C15:0 and summed feature 3 (C16:1ω6c and/or C16:1ω7c) as the major fatty acids. The polar lipids of strain B11T contained phosphatidylethanolamine (PE), two unidentified aminophospholipids (APL1-2) and four unidentified lipids (L1-4), while strain D4T took phosphatidylethanolamine (PE), three aminophospholipids (APL1-3) and four unidentified lipids (L1-4). Menaquinone-6 was their predominant quinone. Based on the phenotypic, chemotaxonomic, phylogenetic and genomic analyses, strains B11T and D4T should be considered as two novel species of the genus Flavobacterium, for which the names Flavobacterium movens (type strain B11T=GDMCC 1.4103T=JCM 36423T) and Flavobacterium mesophilum (type strain D4T=GDMCC 1.4105T=JCM 36424T) are proposed.
期刊介绍:
Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names.
The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including:
Identification, characterisation and culture preservation
Microbial evolution and biodiversity
Molecular environmental work with strong taxonomic or evolutionary content
Nomenclature
Taxonomy and phylogenetics.