Núria Beltran-Sanz, Stefan Prost, Veronica Malavasi, Silvia Moschin, Carola Greve, Tilman Schell, Tomas Morosinotto, Francesco Dal Grande
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Chromosome-level assembly of the 400-year-old Goethe's Palm (Chamaerops humilis L.).
The rapid decline in global biodiversity highlights the urgent need for conservation efforts, with botanical gardens playing a crucial role in ex situ plant preservation. Monumental plants, such as the 400-year-old Goethe's Palm (Chamaerops humilis L.) at the Padua Botanical Garden serve as vital flagship species with significant ecological and cultural value. In this study, we present the first chromosome-level genome assembly of C. humilis, using PacBio HiFi and Arima Hi-C sequencing technologies. The assembled genome spans 4.41 Gbp with a scaffold N50 length of 195 Mbp and it includes 18 pseudo-chromosomes. Repetitive elements constituted approximately 88% of the genome, with Long Terminal Repeats (LTR) alone comprising 63%. A total of 28,321 protein-coding genes were predicted and annotated. The Goethe's Palm genome assembly is a valuable resource for exploring both its cultural and historical significance, as well as the genetic basis of adaptive traits that allow this palm to thrive in Mediterranean environments.
期刊介绍:
Scientific Data is an open-access journal focused on data, publishing descriptions of research datasets and articles on data sharing across natural sciences, medicine, engineering, and social sciences. Its goal is to enhance the sharing and reuse of scientific data, encourage broader data sharing, and acknowledge those who share their data.
The journal primarily publishes Data Descriptors, which offer detailed descriptions of research datasets, including data collection methods and technical analyses validating data quality. These descriptors aim to facilitate data reuse rather than testing hypotheses or presenting new interpretations, methods, or in-depth analyses.