Francesca Casagli , Andrea Turolla , Damien J. Batstone , Gabriel Capson-Tojo , Elena Ficara , Joan García , Eva Gonzalez-Flo , Julien Laurent , Tatjana Lorenz , Michaël Pierrelée , Benedek Gy. Plósz , Gustavo Henrique Ribero Da Silva , Ángel Robles , Simone Rossi , Estel Rueda , Lars Stegemüller , Jean-Philippe Steyer , Olivier Bernard , Borja Valverde-Pérez
{"title":"模拟挑战,以解锁光养系统对废水增值的力量。","authors":"Francesca Casagli , Andrea Turolla , Damien J. Batstone , Gabriel Capson-Tojo , Elena Ficara , Joan García , Eva Gonzalez-Flo , Julien Laurent , Tatjana Lorenz , Michaël Pierrelée , Benedek Gy. Plósz , Gustavo Henrique Ribero Da Silva , Ángel Robles , Simone Rossi , Estel Rueda , Lars Stegemüller , Jean-Philippe Steyer , Olivier Bernard , Borja Valverde-Pérez","doi":"10.1016/j.biotechadv.2025.108709","DOIUrl":null,"url":null,"abstract":"<div><div>Phototrophic microorganisms are gaining prominence for their dual role in wastewater treatment and resource recovery, converting wastewater into valuable bioproducts. However, their effective deployment needs robust modelling frameworks capable of predicting performance across complex, real-world scenarios. Despite significant advances, key challenges hinder the development and application of such models:<ul><li><span>●</span><span><div>Biological complexity: phototrophic systems involve intricate processes (e.g., photosynthesis, nutrient uptake, microbial interactions, and predation) that are difficult to represent accurately due to their dynamic interdependencies.</div></span></li><li><span>●</span><span><div>Environmental variability: permanent fluctuations in light, temperature, pH, and toxic compounds in outdoor reactors require high-resolution dynamic data for reliable model calibration and prediction.</div></span></li><li><span>●</span><span><div>Data limitations: lack of comprehensive, high-quality datasets (e.g., biological, environmental, and operational conditions) constrains model development, particularly for data-driven approaches.</div></span></li><li><span>●</span><span><div>Multi-scale integration: bridging molecular, cellular, and ecosystem-level processes into a unified modelling framework, including physics, remains a significant hurdle.</div></span></li><li><span>●</span><span><div>Parameter and uncertainty management: models often suffer from non-identifiable parameters, sensitivity to approximations, and insufficient validation against long-term experimental data.</div></span></li><li><span>●</span><span><div>Balancing complexity and applicability: selecting the appropriate level of ecological and mathematical details, tailored to specific applications (e.g., biomass production and nutrient removal) and data availability is critical yet challenging.</div></span></li><li><span>●</span><span><div>Computational and interdisciplinary barriers: high computational costs, especially for hybrid and data-driven models, alongside the need for cross-disciplinary collaboration, further complicate model development.</div></span></li><li><span>●</span><span><div>To overcome these barriers, this work argues for standardized protocols in model design, calibration and validation, alongside enhanced data collection and reconciliation efforts. Integrating innovative approaches, such as metabolic modelling, machine learning and hybrid modelling into digital twins, will be essential to unlock the full potential of phototrophic systems, bridging the gap between theoretical models and industrial implementation.</div></span></li></ul></div></div>","PeriodicalId":8946,"journal":{"name":"Biotechnology advances","volume":"85 ","pages":"Article 108709"},"PeriodicalIF":12.5000,"publicationDate":"2025-09-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Modelling challenges to unlock the power of phototrophic systems for wastewater valorization\",\"authors\":\"Francesca Casagli , Andrea Turolla , Damien J. Batstone , Gabriel Capson-Tojo , Elena Ficara , Joan García , Eva Gonzalez-Flo , Julien Laurent , Tatjana Lorenz , Michaël Pierrelée , Benedek Gy. Plósz , Gustavo Henrique Ribero Da Silva , Ángel Robles , Simone Rossi , Estel Rueda , Lars Stegemüller , Jean-Philippe Steyer , Olivier Bernard , Borja Valverde-Pérez\",\"doi\":\"10.1016/j.biotechadv.2025.108709\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Phototrophic microorganisms are gaining prominence for their dual role in wastewater treatment and resource recovery, converting wastewater into valuable bioproducts. However, their effective deployment needs robust modelling frameworks capable of predicting performance across complex, real-world scenarios. Despite significant advances, key challenges hinder the development and application of such models:<ul><li><span>●</span><span><div>Biological complexity: phototrophic systems involve intricate processes (e.g., photosynthesis, nutrient uptake, microbial interactions, and predation) that are difficult to represent accurately due to their dynamic interdependencies.</div></span></li><li><span>●</span><span><div>Environmental variability: permanent fluctuations in light, temperature, pH, and toxic compounds in outdoor reactors require high-resolution dynamic data for reliable model calibration and prediction.</div></span></li><li><span>●</span><span><div>Data limitations: lack of comprehensive, high-quality datasets (e.g., biological, environmental, and operational conditions) constrains model development, particularly for data-driven approaches.</div></span></li><li><span>●</span><span><div>Multi-scale integration: bridging molecular, cellular, and ecosystem-level processes into a unified modelling framework, including physics, remains a significant hurdle.</div></span></li><li><span>●</span><span><div>Parameter and uncertainty management: models often suffer from non-identifiable parameters, sensitivity to approximations, and insufficient validation against long-term experimental data.</div></span></li><li><span>●</span><span><div>Balancing complexity and applicability: selecting the appropriate level of ecological and mathematical details, tailored to specific applications (e.g., biomass production and nutrient removal) and data availability is critical yet challenging.</div></span></li><li><span>●</span><span><div>Computational and interdisciplinary barriers: high computational costs, especially for hybrid and data-driven models, alongside the need for cross-disciplinary collaboration, further complicate model development.</div></span></li><li><span>●</span><span><div>To overcome these barriers, this work argues for standardized protocols in model design, calibration and validation, alongside enhanced data collection and reconciliation efforts. 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Modelling challenges to unlock the power of phototrophic systems for wastewater valorization
Phototrophic microorganisms are gaining prominence for their dual role in wastewater treatment and resource recovery, converting wastewater into valuable bioproducts. However, their effective deployment needs robust modelling frameworks capable of predicting performance across complex, real-world scenarios. Despite significant advances, key challenges hinder the development and application of such models:
●
Biological complexity: phototrophic systems involve intricate processes (e.g., photosynthesis, nutrient uptake, microbial interactions, and predation) that are difficult to represent accurately due to their dynamic interdependencies.
●
Environmental variability: permanent fluctuations in light, temperature, pH, and toxic compounds in outdoor reactors require high-resolution dynamic data for reliable model calibration and prediction.
●
Data limitations: lack of comprehensive, high-quality datasets (e.g., biological, environmental, and operational conditions) constrains model development, particularly for data-driven approaches.
●
Multi-scale integration: bridging molecular, cellular, and ecosystem-level processes into a unified modelling framework, including physics, remains a significant hurdle.
●
Parameter and uncertainty management: models often suffer from non-identifiable parameters, sensitivity to approximations, and insufficient validation against long-term experimental data.
●
Balancing complexity and applicability: selecting the appropriate level of ecological and mathematical details, tailored to specific applications (e.g., biomass production and nutrient removal) and data availability is critical yet challenging.
●
Computational and interdisciplinary barriers: high computational costs, especially for hybrid and data-driven models, alongside the need for cross-disciplinary collaboration, further complicate model development.
●
To overcome these barriers, this work argues for standardized protocols in model design, calibration and validation, alongside enhanced data collection and reconciliation efforts. Integrating innovative approaches, such as metabolic modelling, machine learning and hybrid modelling into digital twins, will be essential to unlock the full potential of phototrophic systems, bridging the gap between theoretical models and industrial implementation.
期刊介绍:
Biotechnology Advances is a comprehensive review journal that covers all aspects of the multidisciplinary field of biotechnology. The journal focuses on biotechnology principles and their applications in various industries, agriculture, medicine, environmental concerns, and regulatory issues. It publishes authoritative articles that highlight current developments and future trends in the field of biotechnology. The journal invites submissions of manuscripts that are relevant and appropriate. It targets a wide audience, including scientists, engineers, students, instructors, researchers, practitioners, managers, governments, and other stakeholders in the field. Additionally, special issues are published based on selected presentations from recent relevant conferences in collaboration with the organizations hosting those conferences.