快速自动可微矩阵函数及其在分子模拟中的应用

IF 3.4 2区 物理与天体物理 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Tina Torabi , Timon S. Gutleb , Christoph Ortner
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引用次数: 0

摘要

我们描述了计算一大类矩阵函数的雅可比矩阵和梯度的有效微分方法,包括矩阵对数log (a)和p次根A1p。我们利用Hale等人(2008)[34]描述的等高线积分和保角映射进行评估和区分,并分析了与高精度有限差分方法相比的计算复杂性和数值精度。作为一个示范应用,我们计算硅晶体在正温度下的结构缺陷的性质,需要有效和准确的矩阵示踪对数梯度。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Fast automatically differentiable matrix functions and applications in molecular simulations
We describe efficient differentiation methods for computing Jacobians and gradients of a large class of matrix functions including the matrix logarithm log(A) and p-th roots A1p. We exploit contour integrals and conformal maps as described by Hale et al. (2008) [34] for evaluation and differentiation and analyze the computational complexity as well as numerical accuracy compared to high accuracy finite difference methods. As a demonstrator application we compute properties of structural defects in silicon crystals at positive temperatures, requiring efficient and accurate gradients of matrix trace-logarithms.
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来源期刊
Computer Physics Communications
Computer Physics Communications 物理-计算机:跨学科应用
CiteScore
12.10
自引率
3.20%
发文量
287
审稿时长
5.3 months
期刊介绍: The focus of CPC is on contemporary computational methods and techniques and their implementation, the effectiveness of which will normally be evidenced by the author(s) within the context of a substantive problem in physics. Within this setting CPC publishes two types of paper. Computer Programs in Physics (CPiP) These papers describe significant computer programs to be archived in the CPC Program Library which is held in the Mendeley Data repository. The submitted software must be covered by an approved open source licence. Papers and associated computer programs that address a problem of contemporary interest in physics that cannot be solved by current software are particularly encouraged. Computational Physics Papers (CP) These are research papers in, but are not limited to, the following themes across computational physics and related disciplines. mathematical and numerical methods and algorithms; computational models including those associated with the design, control and analysis of experiments; and algebraic computation. Each will normally include software implementation and performance details. The software implementation should, ideally, be available via GitHub, Zenodo or an institutional repository.In addition, research papers on the impact of advanced computer architecture and special purpose computers on computing in the physical sciences and software topics related to, and of importance in, the physical sciences may be considered.
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