一种优化的13C单量子CPMG弛豫色散实验,用于研究大型蛋白质的微秒-毫秒时间尺度动力学。

IF 1.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Tairan Yuwen, Jiangshu Liu, Zhilian Xia, Youlin Xia, Paolo Rossi, Charalampos G Kalodimos
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引用次数: 0

摘要

微秒到毫秒(µs-ms)时间尺度的生物分子动力学与各种生物功能有关,如酶催化、变构调节和配体识别。在溶液态核磁共振中,carr - purcell - meiboomm - gill (CPMG)弛豫色散实验通常用于探测µs-ms时间尺度的运动,在原子水平上提供详细的动力学、热力学和力学信息。为了研究高分子量生物分子的构象动力学,甲基由于其良好的弛豫特性而成为理想的探针,13C CPMG弛豫色散被广泛用于表征选择性13ch3标记样品的动力学。然而,使用恒相位CPMG脉冲的传统方案容易受到非共振效应、射频场不均匀性和脉冲缺陷引起的伪影的影响。在这项工作中,我们提出了一个优化的13c单量子(SQ) CPMG实验,结合[0013]相位循环方案,并证明了其对各种不利影响的增强鲁棒性。此外,优化后的脉冲方案能够更精细地采样CPMG脉冲频率,适合研究具有可变JCH标量耦合常数的系统,从而有助于以更高的精度全面表征生物分子的µs-ms时间尺度动力学。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
An optimized 13C single-quantum CPMG relaxation dispersion experiment for investigating microsecond-to-millisecond timescale dynamics in large proteins.

Biomolecular dynamics in the microsecond-to-millisecond (µs-ms) timescale are linked to various biological functions, such as enzyme catalysis, allosteric regulation, and ligand recognition. In solution state NMR, Carr-Purcell-Meiboom-Gill (CPMG) relaxation dispersion experiments are commonly used to probe µs-ms timescale motions, providing detailed kinetic, thermodynamic, and mechanistic information at the atomic level. For investigating conformational dynamics in high-molecular-weight biomolecules, methyl groups serve as ideal probes due to their favorable relaxation properties, and 13C CPMG relaxation dispersion is widely employed for characterizing dynamics in selectively 13CH3-labeled samples. However, conventional schemes that apply CPMG pulses with constant phase are susceptible to artifacts arising from off-resonance effects, radiofrequency (RF) field inhomogeneity and pulse imperfections. In this work we present an optimized13C single-quantum (SQ) CPMG experiment incorporating the [0013]-phase cycling scheme, and demonstrate its enhanced robustness against various adverse effects. Moreover, the optimized pulse scheme enables finer sampling of CPMG pulsing frequencies and is suited for studying systems with variable JCH scalar coupling constants, thereby facilitating comprehensive characterization of µs-ms timescale dynamics of biomolecules with increased precision.

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来源期刊
Journal of Biomolecular NMR
Journal of Biomolecular NMR 生物-光谱学
CiteScore
6.00
自引率
3.70%
发文量
19
审稿时长
6-12 weeks
期刊介绍: The Journal of Biomolecular NMR provides a forum for publishing research on technical developments and innovative applications of nuclear magnetic resonance spectroscopy for the study of structure and dynamic properties of biopolymers in solution, liquid crystals, solids and mixed environments, e.g., attached to membranes. This may include: Three-dimensional structure determination of biological macromolecules (polypeptides/proteins, DNA, RNA, oligosaccharides) by NMR. New NMR techniques for studies of biological macromolecules. Novel approaches to computer-aided automated analysis of multidimensional NMR spectra. Computational methods for the structural interpretation of NMR data, including structure refinement. Comparisons of structures determined by NMR with those obtained by other methods, e.g. by diffraction techniques with protein single crystals. New techniques of sample preparation for NMR experiments (biosynthetic and chemical methods for isotope labeling, preparation of nutrients for biosynthetic isotope labeling, etc.). An NMR characterization of the products must be included.
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