用马尔可夫聚类算法对缺血性心脏病患者进行亚组。

IF 5.4 Q1 MEDICINE, RESEARCH & EXPERIMENTAL
Amalie D Haue, Peter C Holm, Karina Banasik, Kenny Emil Aunstrup, Christian Holm Johansen, Agnete T Lundgaard, Victorine P Muse, Timo Röder, David Westergaard, Piotr J Chmura, Alex H Christensen, Peter E Weeke, Erik Sørensen, Ole B V Pedersen, Sisse R Ostrowski, Kasper K Iversen, Lars V Køber, Henrik Ullum, Henning Bundgaard, Søren Brunak
{"title":"用马尔可夫聚类算法对缺血性心脏病患者进行亚组。","authors":"Amalie D Haue, Peter C Holm, Karina Banasik, Kenny Emil Aunstrup, Christian Holm Johansen, Agnete T Lundgaard, Victorine P Muse, Timo Röder, David Westergaard, Piotr J Chmura, Alex H Christensen, Peter E Weeke, Erik Sørensen, Ole B V Pedersen, Sisse R Ostrowski, Kasper K Iversen, Lars V Køber, Henrik Ullum, Henning Bundgaard, Søren Brunak","doi":"10.1038/s43856-025-01077-1","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Ischemic heart disease (IHD) is heterogeneous with respect to onset, burden of symptoms, and disease progression. We hypothesized that unsupervised clustering analysis could facilitate identification of distinct and clinically relevant multimorbidity clusters.</p><p><strong>Methods: </strong>We included IHD patients who underwent coronary angiography (CAG) or coronary computed tomography angiography (CCTA) between 2004 and 2016 and used the earliest procedure as the index date. Patient health records were obtained from the Danish National Patient Registry, the Danish National Prescription Registry, and two in-hospital laboratory database systems. Genetic data were obtained from the Copenhagen Hospital Biobank. Using registered pre-index diagnosis codes (n = 3046), patients were clustered by application of the Markov Cluster algorithm. Multimorbidity clusters were then characterized using Cox regressions (new ischemic events, non-IHD mortality, and all-cause mortality) and enrichment analysis to explore both risks and phenotypical characteristics.</p><p><strong>Results: </strong>In a cohort of 72,249 patients with IHD (mean age 63.9 years, 63.1% males), 31 distinct clusters (C1-31, 67,136 patients) are identified. Comparing each cluster to the 30 others, seven clusters (9,590 patients) have significantly higher or lower risk of new ischemic events (five and two clusters, respectively). A total of 18 clusters (35,982 patients) have higher or lower risk of death from non-IHD causes (12 and six clusters, respectively), and 23 clusters have a statistically significant higher or lower risk for all-cause mortality. Cardiovascular or inflammatory diseases are commonly enriched in clusters (13). Distributions for 24 laboratory test results differ significantly across clusters. Polygenic risk scores are increased in a total of 15 clusters (48.4%).</p><p><strong>Conclusions: </strong>Based on prior disease profiles, unsupervised clustering robustly stratify patients with IHD in subgroups with similar clinical features and outcomes.</p>","PeriodicalId":72646,"journal":{"name":"Communications medicine","volume":"5 1","pages":"372"},"PeriodicalIF":5.4000,"publicationDate":"2025-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12381225/pdf/","citationCount":"0","resultStr":"{\"title\":\"Subgrouping patients with ischemic heart disease by means of the Markov cluster algorithm.\",\"authors\":\"Amalie D Haue, Peter C Holm, Karina Banasik, Kenny Emil Aunstrup, Christian Holm Johansen, Agnete T Lundgaard, Victorine P Muse, Timo Röder, David Westergaard, Piotr J Chmura, Alex H Christensen, Peter E Weeke, Erik Sørensen, Ole B V Pedersen, Sisse R Ostrowski, Kasper K Iversen, Lars V Køber, Henrik Ullum, Henning Bundgaard, Søren Brunak\",\"doi\":\"10.1038/s43856-025-01077-1\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>Ischemic heart disease (IHD) is heterogeneous with respect to onset, burden of symptoms, and disease progression. We hypothesized that unsupervised clustering analysis could facilitate identification of distinct and clinically relevant multimorbidity clusters.</p><p><strong>Methods: </strong>We included IHD patients who underwent coronary angiography (CAG) or coronary computed tomography angiography (CCTA) between 2004 and 2016 and used the earliest procedure as the index date. Patient health records were obtained from the Danish National Patient Registry, the Danish National Prescription Registry, and two in-hospital laboratory database systems. Genetic data were obtained from the Copenhagen Hospital Biobank. Using registered pre-index diagnosis codes (n = 3046), patients were clustered by application of the Markov Cluster algorithm. Multimorbidity clusters were then characterized using Cox regressions (new ischemic events, non-IHD mortality, and all-cause mortality) and enrichment analysis to explore both risks and phenotypical characteristics.</p><p><strong>Results: </strong>In a cohort of 72,249 patients with IHD (mean age 63.9 years, 63.1% males), 31 distinct clusters (C1-31, 67,136 patients) are identified. Comparing each cluster to the 30 others, seven clusters (9,590 patients) have significantly higher or lower risk of new ischemic events (five and two clusters, respectively). A total of 18 clusters (35,982 patients) have higher or lower risk of death from non-IHD causes (12 and six clusters, respectively), and 23 clusters have a statistically significant higher or lower risk for all-cause mortality. Cardiovascular or inflammatory diseases are commonly enriched in clusters (13). Distributions for 24 laboratory test results differ significantly across clusters. Polygenic risk scores are increased in a total of 15 clusters (48.4%).</p><p><strong>Conclusions: </strong>Based on prior disease profiles, unsupervised clustering robustly stratify patients with IHD in subgroups with similar clinical features and outcomes.</p>\",\"PeriodicalId\":72646,\"journal\":{\"name\":\"Communications medicine\",\"volume\":\"5 1\",\"pages\":\"372\"},\"PeriodicalIF\":5.4000,\"publicationDate\":\"2025-08-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12381225/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Communications medicine\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1038/s43856-025-01077-1\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MEDICINE, RESEARCH & EXPERIMENTAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Communications medicine","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1038/s43856-025-01077-1","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MEDICINE, RESEARCH & EXPERIMENTAL","Score":null,"Total":0}
引用次数: 0

摘要

背景:缺血性心脏病(IHD)在发病、症状负担和疾病进展方面具有异质性。我们假设无监督聚类分析可以促进识别不同的和临床相关的多病聚类。方法:我们纳入了2004年至2016年间接受冠状动脉造影(CAG)或冠状动脉计算机断层扫描血管造影(CCTA)的IHD患者,并以最早的手术作为索引日期。患者健康记录从丹麦国家患者登记处、丹麦国家处方登记处和两个院内实验室数据库系统获得。基因数据来自哥本哈根医院生物银行。使用注册的索引前诊断码(n = 3046),应用马尔可夫聚类算法对患者进行聚类。然后使用Cox回归(新缺血性事件、非ihd死亡率和全因死亡率)和富集分析来确定多发病集群的特征,以探索风险和表型特征。结果:在72249例IHD患者(平均年龄63.9岁,男性63.1%)的队列中,确定了31个不同的集群(c1 - 31,67,136例患者)。将每组与其他30组进行比较,有7组(9590名患者)的新缺血性事件风险明显更高或更低(分别为5组和2组)。共有18组(35,982例患者)因非ihd原因死亡的风险较高或较低(分别为12组和6组),23组的全因死亡风险具有统计学意义的较高或较低。心血管或炎症性疾病通常以簇状富集(13)。24项实验室检测结果的分布在聚类之间存在显著差异。共有15个集群的多基因风险评分增加(48.4%)。结论:基于先前的疾病概况,无监督聚类有力地将IHD患者分层为具有相似临床特征和结果的亚组。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Subgrouping patients with ischemic heart disease by means of the Markov cluster algorithm.

Subgrouping patients with ischemic heart disease by means of the Markov cluster algorithm.

Subgrouping patients with ischemic heart disease by means of the Markov cluster algorithm.

Subgrouping patients with ischemic heart disease by means of the Markov cluster algorithm.

Background: Ischemic heart disease (IHD) is heterogeneous with respect to onset, burden of symptoms, and disease progression. We hypothesized that unsupervised clustering analysis could facilitate identification of distinct and clinically relevant multimorbidity clusters.

Methods: We included IHD patients who underwent coronary angiography (CAG) or coronary computed tomography angiography (CCTA) between 2004 and 2016 and used the earliest procedure as the index date. Patient health records were obtained from the Danish National Patient Registry, the Danish National Prescription Registry, and two in-hospital laboratory database systems. Genetic data were obtained from the Copenhagen Hospital Biobank. Using registered pre-index diagnosis codes (n = 3046), patients were clustered by application of the Markov Cluster algorithm. Multimorbidity clusters were then characterized using Cox regressions (new ischemic events, non-IHD mortality, and all-cause mortality) and enrichment analysis to explore both risks and phenotypical characteristics.

Results: In a cohort of 72,249 patients with IHD (mean age 63.9 years, 63.1% males), 31 distinct clusters (C1-31, 67,136 patients) are identified. Comparing each cluster to the 30 others, seven clusters (9,590 patients) have significantly higher or lower risk of new ischemic events (five and two clusters, respectively). A total of 18 clusters (35,982 patients) have higher or lower risk of death from non-IHD causes (12 and six clusters, respectively), and 23 clusters have a statistically significant higher or lower risk for all-cause mortality. Cardiovascular or inflammatory diseases are commonly enriched in clusters (13). Distributions for 24 laboratory test results differ significantly across clusters. Polygenic risk scores are increased in a total of 15 clusters (48.4%).

Conclusions: Based on prior disease profiles, unsupervised clustering robustly stratify patients with IHD in subgroups with similar clinical features and outcomes.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信