Shadi Vandvajdi, Yuannong Mao, Mahla Poudineh, Mohammad Kohandel
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引用次数: 0
摘要
了解癌细胞的代谢适应对于发现潜在的治疗靶点和改进治疗策略至关重要。在这项研究中,我们提出了一个混合建模框架,结合了物理信息神经网络(pinn)和通用神经网络(UPINNs)来研究胶质母细胞瘤细胞系中葡萄糖-乳酸代谢。我们首先使用pinn来推断控制肿瘤细胞中葡萄糖摄取和表型转换的关键模型参数,使用合成数据证明了高精度。然后,我们使用upinn扩展该框架,以揭示无法明确建模的隐藏代谢动力学,引入潜在变量$ W $来表示糖酵解过程中未知的功能行为。我们的方法在两种具有不同代谢表型的胶质母细胞瘤细胞系(LN18和LN229)的合成和实验数据集中得到了验证。UPINN框架不仅捕获细胞类型特异性行为,而且在存在适度实验噪声的情况下保持鲁棒性。此外,我们探讨了模型对数据保真度和机制约束之间权衡的敏感性,表明损失项权重的选择显著影响预测性能。虽然我们的应用集中在癌症代谢上,但所提出的方法是通用的,适用于由微分方程描述的广泛系统,包括生物学、工程和物理科学中的问题。这项工作证明了upinn作为一种强大的、可解释的工具,可以在部分观测到的动力系统中进行数据驱动的发现。
Investigating glucose-lactate metabolism in glioblastoma multiforme via universal physics-informed neural networks.
Understanding the metabolic adaptations of cancer cells is crucial for uncovering potential therapeutic targets and improving treatment strategies. In this study, we present a hybrid modeling framework that combines Physics-Informed Neural Networks (PINNs) and Universal PINNs (UPINNs) to investigate glucose-lactate metabolism in glioblastoma cell lines. We first employed PINNs to infer critical model parameters governing glucose uptake and phenotypic switching in tumor cells, demonstrating high accuracy using synthetic data. We then extended this framework using UPINNs to uncover hidden metabolic dynamics that could not be explicitly modeled, introducing a latent variable $ W $ to represent unknown functional behavior in glycolytic processes. Our approach was validated for both synthetic and experimental datasets for two glioblastoma cell lines (LN18 and LN229) with distinct metabolic phenotypes. The UPINN framework not only captured cell-type-specific behaviors but also remained robust in the presence of moderate experimental noise. Furthermore, we explored the sensitivity of the model to the trade-off between data fidelity and mechanistic constraints, showing that the choice of loss term weighting significantly impacts predictive performance. While our application centered on cancer metabolism, the proposed method was general and applicable to a wide range of systems described by differential equations, including problems in biology, engineering, and physical sciences. This work demonstrates the potential of UPINNs as a powerful and interpretable tool for data-driven discovery in partially observed dynamical systems.
期刊介绍:
Mathematical Biosciences and Engineering (MBE) is an interdisciplinary Open Access journal promoting cutting-edge research, technology transfer and knowledge translation about complex data and information processing.
MBE publishes Research articles (long and original research); Communications (short and novel research); Expository papers; Technology Transfer and Knowledge Translation reports (description of new technologies and products); Announcements and Industrial Progress and News (announcements and even advertisement, including major conferences).