覆盖海绵支架水平基因组序列，Halisarca caerulea Vacelet & Donadey, 1987，及其相关微生物宏基因组序列。

Q1 Medicine

Wellcome Open Research Pub Date : 2025-07-09 eCollection Date: 2025-01-01 DOI:10.12688/wellcomeopenres.24281.1

Jasper M de Goeij, Benjamin Mueller, Michelle Achlatis, Sara Campana, Meggie Hudspith, Niklas A Kornder, Ute Hentschel, Graeme Oatley, Elizabeth Sinclair, Eerik Aunin, Noah Gettle, Camilla Santos, Michael Paulini, Haoyu Niu, Victoria McKenna, Rebecca O'Brien

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引用次数: 0

摘要

我们提出了一个支架水平的基因组组装从haisarca caerulea标本（包壳海绵；Porifera; Demospongiae; Chondrillida; Halisarcidae）。基因组序列全长195.70兆碱基。线粒体基因组也已组装完毕，长度为19.15千碱基。该组合在Ensembl上的基因注释鉴定出26,722个蛋白质编码基因。对标本进行宏基因组组装，鉴定出与相关海绵共生体分支Alphaproteobacteria bacterium GM7ARS4和Gammaproteobacteria bacterium AqS2 （Tethybacterales）相关的4个细菌基因组。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

The scaffold-level genome sequence of an encrusting sponge, Halisarca caerulea Vacelet & Donadey, 1987, and its associated microbial metagenome sequences.

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The scaffold-level genome sequence of an encrusting sponge, Halisarca caerulea Vacelet & Donadey, 1987, and its associated microbial metagenome sequences.

We present a scaffold-level genome assembly from a Halisarca caerulea specimen (encrusting sponge; Porifera; Demospongiae; Chondrillida; Halisarcidae). The genome sequence is 195.70 megabases in span. The mitochondrial genome has also been assembled and is 19.15 kilobases in length. Gene annotation of this assembly on Ensembl identified 26,722 protein-coding genes. The metagenome of the specimen was also assembled and four binned bacterial genomes related to the relevant sponge symbiont clades Alphaproteobacteria bacterium GM7ARS4 and Gammaproteobacteria bacterium AqS2 ((Tethybacterales) were identified.

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来源期刊

Wellcome Open Research Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (all)

CiteScore

5.50

自引率

0.00%

发文量

426

审稿时长

1 weeks

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