Zhizhou Ren, Kun Liang, Yingqi Zhang, Jinpeng Song, Xiaoxiao Wu, Chi Zhang, Xiuming Mei, Yi Zhang, Xin Liu
{"title":"基于改进的YOLOv5显微图像的小麦小目标真菌孢子智能检测方法","authors":"Zhizhou Ren, Kun Liang, Yingqi Zhang, Jinpeng Song, Xiaoxiao Wu, Chi Zhang, Xiuming Mei, Yi Zhang, Xin Liu","doi":"10.1186/s13007-025-01436-y","DOIUrl":null,"url":null,"abstract":"<p><p>Wheat is significantly impacted by fungal diseases, which result in severe economic losses. These diseases result from pathogenic spores invading wheat. Rapid and accurate detection of these spores is essential for post-harvest contamination risk assessment and early warning. Traditional detection methods are time-consuming and labor-intensive, and difficult to detect small target spores in complex environments. Therefore, a YOLO-ASF-MobileViT detection algorithm is proposed to detect pathogenic wheat spores with varying sizes, shapes, and textures. Four types of common pathogenic wheat spores are used as the study object, including Fusarium graminearum, Aspergillus flavus, Tilletia foetida (sporidium maturum), and Tilletia foetida (sporidium immaturum). The Attentional Scale Sequence Fusion (ASF) is integrated into the original YOLOv5s to enhance the capture of small details in spore images and fuse multi-scale feature information of spores. Additionally, the Mobile Vision Transformer (MobileViT) attention mechanism is incorporated to enhance both local and global feature extraction for small spores. Experimental results show that the proposed YOLO-ASF-MobileViT model achieves an overall mAP@0.5 of 97.0%, outperforming advanced detectors such as TPH-YOLO (95.6%) and MG-YOLO (95.5%). Compared to the baseline YOLOv5s model, it improves the average detection accuracy by 1.6%, with a notable 4.3% increase in detecting small Aspergillus flavus spores (reaching 90.8%). The model maintains high robustness in challenging scenarios such as spore adhesion, occlusion, blur, and noise. This approach enables efficient and accurate detection of wheat fungal spores, supporting early contamination warning in post-harvest management.</p>","PeriodicalId":20100,"journal":{"name":"Plant Methods","volume":"21 1","pages":"117"},"PeriodicalIF":4.4000,"publicationDate":"2025-08-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12372353/pdf/","citationCount":"0","resultStr":"{\"title\":\"An intelligent method for detection of small target fungal wheat spores based on an improved YOLOv5 with microscopic images.\",\"authors\":\"Zhizhou Ren, Kun Liang, Yingqi Zhang, Jinpeng Song, Xiaoxiao Wu, Chi Zhang, Xiuming Mei, Yi Zhang, Xin Liu\",\"doi\":\"10.1186/s13007-025-01436-y\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Wheat is significantly impacted by fungal diseases, which result in severe economic losses. These diseases result from pathogenic spores invading wheat. Rapid and accurate detection of these spores is essential for post-harvest contamination risk assessment and early warning. Traditional detection methods are time-consuming and labor-intensive, and difficult to detect small target spores in complex environments. Therefore, a YOLO-ASF-MobileViT detection algorithm is proposed to detect pathogenic wheat spores with varying sizes, shapes, and textures. Four types of common pathogenic wheat spores are used as the study object, including Fusarium graminearum, Aspergillus flavus, Tilletia foetida (sporidium maturum), and Tilletia foetida (sporidium immaturum). The Attentional Scale Sequence Fusion (ASF) is integrated into the original YOLOv5s to enhance the capture of small details in spore images and fuse multi-scale feature information of spores. Additionally, the Mobile Vision Transformer (MobileViT) attention mechanism is incorporated to enhance both local and global feature extraction for small spores. Experimental results show that the proposed YOLO-ASF-MobileViT model achieves an overall mAP@0.5 of 97.0%, outperforming advanced detectors such as TPH-YOLO (95.6%) and MG-YOLO (95.5%). Compared to the baseline YOLOv5s model, it improves the average detection accuracy by 1.6%, with a notable 4.3% increase in detecting small Aspergillus flavus spores (reaching 90.8%). The model maintains high robustness in challenging scenarios such as spore adhesion, occlusion, blur, and noise. 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An intelligent method for detection of small target fungal wheat spores based on an improved YOLOv5 with microscopic images.
Wheat is significantly impacted by fungal diseases, which result in severe economic losses. These diseases result from pathogenic spores invading wheat. Rapid and accurate detection of these spores is essential for post-harvest contamination risk assessment and early warning. Traditional detection methods are time-consuming and labor-intensive, and difficult to detect small target spores in complex environments. Therefore, a YOLO-ASF-MobileViT detection algorithm is proposed to detect pathogenic wheat spores with varying sizes, shapes, and textures. Four types of common pathogenic wheat spores are used as the study object, including Fusarium graminearum, Aspergillus flavus, Tilletia foetida (sporidium maturum), and Tilletia foetida (sporidium immaturum). The Attentional Scale Sequence Fusion (ASF) is integrated into the original YOLOv5s to enhance the capture of small details in spore images and fuse multi-scale feature information of spores. Additionally, the Mobile Vision Transformer (MobileViT) attention mechanism is incorporated to enhance both local and global feature extraction for small spores. Experimental results show that the proposed YOLO-ASF-MobileViT model achieves an overall mAP@0.5 of 97.0%, outperforming advanced detectors such as TPH-YOLO (95.6%) and MG-YOLO (95.5%). Compared to the baseline YOLOv5s model, it improves the average detection accuracy by 1.6%, with a notable 4.3% increase in detecting small Aspergillus flavus spores (reaching 90.8%). The model maintains high robustness in challenging scenarios such as spore adhesion, occlusion, blur, and noise. This approach enables efficient and accurate detection of wheat fungal spores, supporting early contamination warning in post-harvest management.
期刊介绍:
Plant Methods is an open access, peer-reviewed, online journal for the plant research community that encompasses all aspects of technological innovation in the plant sciences.
There is no doubt that we have entered an exciting new era in plant biology. The completion of the Arabidopsis genome sequence, and the rapid progress being made in other plant genomics projects are providing unparalleled opportunities for progress in all areas of plant science. Nevertheless, enormous challenges lie ahead if we are to understand the function of every gene in the genome, and how the individual parts work together to make the whole organism. Achieving these goals will require an unprecedented collaborative effort, combining high-throughput, system-wide technologies with more focused approaches that integrate traditional disciplines such as cell biology, biochemistry and molecular genetics.
Technological innovation is probably the most important catalyst for progress in any scientific discipline. Plant Methods’ goal is to stimulate the development and adoption of new and improved techniques and research tools and, where appropriate, to promote consistency of methodologies for better integration of data from different laboratories.