Pankaj Paul, Kaushik Biswas, Sergio de Los Santos Villalobos, Maria Edith Ortega Urquieta, Dhruba Bhattacharya, Sanmoy Karmakar, Kamalika Mazumder, Hariom Kushwaha
{"title":"从印度孙德尔本斯红树林分离的一种产抗生素菌株洛锡安链霉菌。","authors":"Pankaj Paul, Kaushik Biswas, Sergio de Los Santos Villalobos, Maria Edith Ortega Urquieta, Dhruba Bhattacharya, Sanmoy Karmakar, Kamalika Mazumder, Hariom Kushwaha","doi":"10.1002/jobm.70096","DOIUrl":null,"url":null,"abstract":"<p><p>Strain KLOTTS4A1<sup>T</sup> was isolated from the soil sediment of the mangrove forest of Lothian Island, Sundarbans, West Bengal, India. The chemotaxonomic and phenotypic characteristics of the strain indicated that the isolate belongs to the genus Streptomyces. 16S rRNA gene analysis revealed that the strain was most closely related to the strains Streptomyces indicus IH32-1<sup>T</sup> (97.65%), Streptomyces montanus NEAU-C151<sup>T</sup> (97.52%), Streptomyces chlorus BK125<sup>T</sup> (97.49%) and Streptomyces mesophilus YC504<sup>T</sup> (97.45%). After genome sequencing, the G + C content of strain KLOTTS4A1<sup>T</sup> was 71.03 mol%. The ANI and dDDH values between the strain KLOTTS4A1<sup>T</sup> and its closest neighbor Streptomyces indicus IH32-1<sup>T</sup> were as follows: ANIb (84.43%), ANIm (87.59%), OrthoANI (84.57%), and GGDC values of 29.40%. All these values are significantly below the established species delineation thresholds of 70% for dDDH and 95%-96% for ANI. Cell wall composition of strain KLOTTS4A1<sup>T</sup> showed the presence of ribose, mannose, and arabinose. The cell wall composed of LL-DAP in the peptidoglycan. Principle polar phospholipids are phosphatidylethanolamine, diphosphotidyl glycerol, and phosphatidyl inositol. Strain KLOTTS4A1<sup>T</sup> was characterized by its predominant fatty acids, including iso-C<sub>15:0</sub>, anteiso-C<sub>15:0</sub>, and iso-C<sub>16:0</sub>. Comprehensive genomic and phenotypic analyses revealed that this strain is distinct from closely related species of the genus Streptomyces. Based on these findings, strain KLOTTS4A1<sup>T</sup> is proposed as a novel species of the genus Streptomyces, for which the name Streptomyces lothianensis sp. nov. is suggested. The type strain is KLOTTS4A1<sup>T</sup> ( = MTCC 13769<sup>T</sup> = NRRL B-65739<sup>T</sup> = COL-B-01923<sup>T</sup>).</p>","PeriodicalId":15101,"journal":{"name":"Journal of Basic Microbiology","volume":" ","pages":"e70096"},"PeriodicalIF":2.7000,"publicationDate":"2025-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Streptomyces lothianensis sp. nov., an Antibiotic-Producing Strain Isolated From the Indian Sundarbans Mangrove Forest.\",\"authors\":\"Pankaj Paul, Kaushik Biswas, Sergio de Los Santos Villalobos, Maria Edith Ortega Urquieta, Dhruba Bhattacharya, Sanmoy Karmakar, Kamalika Mazumder, Hariom Kushwaha\",\"doi\":\"10.1002/jobm.70096\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Strain KLOTTS4A1<sup>T</sup> was isolated from the soil sediment of the mangrove forest of Lothian Island, Sundarbans, West Bengal, India. The chemotaxonomic and phenotypic characteristics of the strain indicated that the isolate belongs to the genus Streptomyces. 16S rRNA gene analysis revealed that the strain was most closely related to the strains Streptomyces indicus IH32-1<sup>T</sup> (97.65%), Streptomyces montanus NEAU-C151<sup>T</sup> (97.52%), Streptomyces chlorus BK125<sup>T</sup> (97.49%) and Streptomyces mesophilus YC504<sup>T</sup> (97.45%). After genome sequencing, the G + C content of strain KLOTTS4A1<sup>T</sup> was 71.03 mol%. The ANI and dDDH values between the strain KLOTTS4A1<sup>T</sup> and its closest neighbor Streptomyces indicus IH32-1<sup>T</sup> were as follows: ANIb (84.43%), ANIm (87.59%), OrthoANI (84.57%), and GGDC values of 29.40%. All these values are significantly below the established species delineation thresholds of 70% for dDDH and 95%-96% for ANI. Cell wall composition of strain KLOTTS4A1<sup>T</sup> showed the presence of ribose, mannose, and arabinose. The cell wall composed of LL-DAP in the peptidoglycan. Principle polar phospholipids are phosphatidylethanolamine, diphosphotidyl glycerol, and phosphatidyl inositol. Strain KLOTTS4A1<sup>T</sup> was characterized by its predominant fatty acids, including iso-C<sub>15:0</sub>, anteiso-C<sub>15:0</sub>, and iso-C<sub>16:0</sub>. Comprehensive genomic and phenotypic analyses revealed that this strain is distinct from closely related species of the genus Streptomyces. Based on these findings, strain KLOTTS4A1<sup>T</sup> is proposed as a novel species of the genus Streptomyces, for which the name Streptomyces lothianensis sp. nov. is suggested. The type strain is KLOTTS4A1<sup>T</sup> ( = MTCC 13769<sup>T</sup> = NRRL B-65739<sup>T</sup> = COL-B-01923<sup>T</sup>).</p>\",\"PeriodicalId\":15101,\"journal\":{\"name\":\"Journal of Basic Microbiology\",\"volume\":\" \",\"pages\":\"e70096\"},\"PeriodicalIF\":2.7000,\"publicationDate\":\"2025-08-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Basic Microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1002/jobm.70096\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Basic Microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1002/jobm.70096","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Streptomyces lothianensis sp. nov., an Antibiotic-Producing Strain Isolated From the Indian Sundarbans Mangrove Forest.
Strain KLOTTS4A1T was isolated from the soil sediment of the mangrove forest of Lothian Island, Sundarbans, West Bengal, India. The chemotaxonomic and phenotypic characteristics of the strain indicated that the isolate belongs to the genus Streptomyces. 16S rRNA gene analysis revealed that the strain was most closely related to the strains Streptomyces indicus IH32-1T (97.65%), Streptomyces montanus NEAU-C151T (97.52%), Streptomyces chlorus BK125T (97.49%) and Streptomyces mesophilus YC504T (97.45%). After genome sequencing, the G + C content of strain KLOTTS4A1T was 71.03 mol%. The ANI and dDDH values between the strain KLOTTS4A1T and its closest neighbor Streptomyces indicus IH32-1T were as follows: ANIb (84.43%), ANIm (87.59%), OrthoANI (84.57%), and GGDC values of 29.40%. All these values are significantly below the established species delineation thresholds of 70% for dDDH and 95%-96% for ANI. Cell wall composition of strain KLOTTS4A1T showed the presence of ribose, mannose, and arabinose. The cell wall composed of LL-DAP in the peptidoglycan. Principle polar phospholipids are phosphatidylethanolamine, diphosphotidyl glycerol, and phosphatidyl inositol. Strain KLOTTS4A1T was characterized by its predominant fatty acids, including iso-C15:0, anteiso-C15:0, and iso-C16:0. Comprehensive genomic and phenotypic analyses revealed that this strain is distinct from closely related species of the genus Streptomyces. Based on these findings, strain KLOTTS4A1T is proposed as a novel species of the genus Streptomyces, for which the name Streptomyces lothianensis sp. nov. is suggested. The type strain is KLOTTS4A1T ( = MTCC 13769T = NRRL B-65739T = COL-B-01923T).
期刊介绍:
The Journal of Basic Microbiology (JBM) publishes primary research papers on both procaryotic and eucaryotic microorganisms, including bacteria, archaea, fungi, algae, protozoans, phages, viruses, viroids and prions.
Papers published deal with:
microbial interactions (pathogenic, mutualistic, environmental),
ecology,
physiology,
genetics and cell biology/development,
new methodologies, i.e., new imaging technologies (e.g. video-fluorescence microscopy, modern TEM applications)
novel molecular biology methods (e.g. PCR-based gene targeting or cassettes for cloning of GFP constructs).