从湿地土壤中分离的疏水包杆菌和韩景氏包杆菌的分离与鉴定。

IF 2 3区 生物学 Q4 MICROBIOLOGY
Muhammad Zubair Siddiqi, Wan-Taek Im
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引用次数: 0

摘要

从韩国湿土中分离到2株细菌,分别命名为AS307T和AS339T。基因组分析表明,菌株AS307T和AS339T属于Paucibacter属,与少养Paucibacter KCTC 42519T和‘Paucibacter aquatile’KCCM 90284T的16S rRNA基因相似性最高(≥97.9%)。菌株AS307T和AS339T的基因组草图由5,374,046和5,098,490 bp的环状染色体组成,DNA G+C含量分别为67.6%和62.7 mol%。菌株AS307T和AS339T的主要醌类为泛醌8,主要脂肪酸为C16: 0、C16: 1 ω7c/C16: 1 ω6c(总特征3),主要极性脂质为磷脂酰甘油、二磷脂酰甘油和磷脂酰乙醇胺。菌株AS307T和AS339T与系统发育最接近的菌株的平均nt同一性和数字DNA-DNA杂交值分别小于80.5%和19.0 ~ 22.5%。此外,基因组学、生理和生化结果允许菌株AS307T和AS339T与它们最近的物种和其他有效发表名称的Paucibacter属物种进行表型和基因型区分。因此,AS307T和AS339T都代表了Paucibacter属的新种,并建议将其命名为Paucibacter soli sp. 11(型株AS307T=KACC 23091T=LMG 32952T)和Paucibacter hankyongi sp. 11(型株AS339T=KACC 23092T=LMG 32953T)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Isolation and characterization of Paucibacter soli sp. nov. and Paucibacter hankyongi sp. nov. isolated from wetland soil.

Two bacterial strains, designated as AS307T and AS339T, were isolated from wet soil in South Korea. The genome analysis shows that strains AS307T and AS339T belong to the genus Paucibacter and share the highest 16S rRNA gene similarity (≥97.9%) with Paucibacter oligotrophus KCTC 42519T and 'Paucibacter aquatile' KCCM 90284T, respectively. The draft genome of strains AS307T and AS339T consists of circular chromosomes of 5,374,046 and 5,098,490 bp with DNA G+C content of 67.6 mol% and 62.7 mol%, respectively. Strains AS307T and AS339T show the ubiquinone 8 as the major quinone, C16 : 0, C16 : 1  ω7c/C16 : 1  ω6c (summed feature 3) as major fatty acids and phosphatidylglycerol, diphosphatidylglycerol and phosphatidylethanolamine as major polar lipids. The average nt identity and digital DNA-DNA hybridization values between strains AS307T and AS339T and phylogenetically closest strains were less than 80.5% and 19.0-22.5%, respectively. Furthermore, the genomic, physiological and biochemical results allow the phenotypic and genotypic differentiation of strains AS307T and AS339T from their closest and other species of the genus Paucibacter with validly published names. Therefore, both strains AS307T and AS339T represent novel species of the genus Paucibacter, for which the names Paucibacter soli sp. nov. (type strain AS307T=KACC 23091T=LMG 32952T) and Paucibacter hankyongi sp. nov. (type strain AS339T=KACC 23092T=LMG 32953T) are proposed.

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来源期刊
CiteScore
5.20
自引率
21.40%
发文量
426
审稿时长
1 months
期刊介绍: Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names. The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including: Identification, characterisation and culture preservation Microbial evolution and biodiversity Molecular environmental work with strong taxonomic or evolutionary content Nomenclature Taxonomy and phylogenetics.
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