从菲律宾马荣火山土壤中分离的马荣链霉菌。

IF 2 3区 生物学 Q4 MICROBIOLOGY
Gerald M Aguilar, Kristel Mae P Oliveros, Albert Remus R Rosana, Rina B Opulencia, Asuncion K Raymundo
{"title":"从菲律宾马荣火山土壤中分离的马荣链霉菌。","authors":"Gerald M Aguilar, Kristel Mae P Oliveros, Albert Remus R Rosana, Rina B Opulencia, Asuncion K Raymundo","doi":"10.1099/ijsem.0.006900","DOIUrl":null,"url":null,"abstract":"<p><p>A novel actinobacterium, designated as strain A1-08<sup>T</sup>, was isolated from the volcanic soils of Mt. Mayon, Philippines. Phylogenetic analysis of the 16S rRNA gene sequence revealed that strain A1-08<sup>T</sup> belonged to the genus <i>Streptomyces</i> with sequence similarity with <i>Streptomyces djakartensis</i> NBRC 15409<sup>T</sup> (99.02%), <i>Streptomyces tuirus</i> NBRC 15617<sup>T</sup> (98.88%) and <i>Streptomyces mutabilis</i> NBRC 12800<sup>T</sup> (98.81%). Polyphasic characterization demonstrated distinct morphological, cultural, physiological and biochemical features with unique lipid and fatty acid profiles and respiratory quinones. The major phospholipids of strain A1-08<sup>T</sup> are diphosphatidylglycerol, phosphatidylethanolamine, glycophospholipid with mannose and/or galactose and unidentified lipids such as aminolipid and phospholipid. The major cellular fatty acids were anteiso-C<sub>15 : 0</sub>, C<sub>16 : 0</sub>, anteiso-C<sub>17 : 0</sub>, iso-C<sub>16 : 0</sub>, iso-C<sub>15 : 0</sub> and C<sub>16 : 1</sub>  <i>ω</i>7c. The respiratory quinones of the strain include MK-9 (H6), MK-9 (H8), MK-10 (H6) and MK-10 (H8). Multilocus analysis using the concatenated sequences of <i>atpD</i>, <i>gyrB</i>, <i>recA</i>, <i>rpoB</i> and <i>trpB</i> showed that the strain formed a distinct branch in the genus <i>Streptomyces.</i> Potential genes for environmental stress response and adaptation were identified in the genome of strain A1-08<sup>T</sup> and its closest relative strains. Whole-genome sequencing confirmed A1-08<sup>T</sup> as a novel species within <i>Streptomyces</i> with 57.80% digital DNA-DNA hybridization and 93.03% average nt identity value with the closest type strain <i>Streptomyces olivaceus</i> NRRL B-3009<sup>T</sup>. The name <i>Streptomyces mayonensis</i> sp. nov., derived from the Mayon Volcano in the Philippines, is hereby proposed (type strain A1-08<sup>T</sup> =JCM 36345, =DSM 118395).</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"75 9","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12401495/pdf/","citationCount":"0","resultStr":"{\"title\":\"<i>Streptomyces mayonensis</i> sp. nov., isolated from the volcanic soils of Mt. Mayon, Philippines.\",\"authors\":\"Gerald M Aguilar, Kristel Mae P Oliveros, Albert Remus R Rosana, Rina B Opulencia, Asuncion K Raymundo\",\"doi\":\"10.1099/ijsem.0.006900\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A novel actinobacterium, designated as strain A1-08<sup>T</sup>, was isolated from the volcanic soils of Mt. Mayon, Philippines. Phylogenetic analysis of the 16S rRNA gene sequence revealed that strain A1-08<sup>T</sup> belonged to the genus <i>Streptomyces</i> with sequence similarity with <i>Streptomyces djakartensis</i> NBRC 15409<sup>T</sup> (99.02%), <i>Streptomyces tuirus</i> NBRC 15617<sup>T</sup> (98.88%) and <i>Streptomyces mutabilis</i> NBRC 12800<sup>T</sup> (98.81%). Polyphasic characterization demonstrated distinct morphological, cultural, physiological and biochemical features with unique lipid and fatty acid profiles and respiratory quinones. The major phospholipids of strain A1-08<sup>T</sup> are diphosphatidylglycerol, phosphatidylethanolamine, glycophospholipid with mannose and/or galactose and unidentified lipids such as aminolipid and phospholipid. The major cellular fatty acids were anteiso-C<sub>15 : 0</sub>, C<sub>16 : 0</sub>, anteiso-C<sub>17 : 0</sub>, iso-C<sub>16 : 0</sub>, iso-C<sub>15 : 0</sub> and C<sub>16 : 1</sub>  <i>ω</i>7c. The respiratory quinones of the strain include MK-9 (H6), MK-9 (H8), MK-10 (H6) and MK-10 (H8). Multilocus analysis using the concatenated sequences of <i>atpD</i>, <i>gyrB</i>, <i>recA</i>, <i>rpoB</i> and <i>trpB</i> showed that the strain formed a distinct branch in the genus <i>Streptomyces.</i> Potential genes for environmental stress response and adaptation were identified in the genome of strain A1-08<sup>T</sup> and its closest relative strains. Whole-genome sequencing confirmed A1-08<sup>T</sup> as a novel species within <i>Streptomyces</i> with 57.80% digital DNA-DNA hybridization and 93.03% average nt identity value with the closest type strain <i>Streptomyces olivaceus</i> NRRL B-3009<sup>T</sup>. The name <i>Streptomyces mayonensis</i> sp. nov., derived from the Mayon Volcano in the Philippines, is hereby proposed (type strain A1-08<sup>T</sup> =JCM 36345, =DSM 118395).</p>\",\"PeriodicalId\":14390,\"journal\":{\"name\":\"International journal of systematic and evolutionary microbiology\",\"volume\":\"75 9\",\"pages\":\"\"},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2025-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12401495/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International journal of systematic and evolutionary microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006900\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International journal of systematic and evolutionary microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006900","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

从菲律宾马荣火山土壤中分离到一株放线菌,命名为A1-08T。系统发育分析表明,菌株A1-08T属于链霉菌属,与jakartensis链霉菌NBRC 15409T(99.02%)、tuiravirus链霉菌NBRC 15617T(98.88%)和mutabilis链霉菌NBRC 12800T(98.81%)序列相似。多相表征显示出独特的形态、培养、生理和生化特征,具有独特的脂质和脂肪酸谱和呼吸醌。菌株A1-08T的主要磷脂是二磷脂酰甘油、磷脂酰乙醇胺、含甘露糖和/或半乳糖的糖磷脂以及未识别的脂质,如氨基脂和磷脂。主要的细胞脂肪酸是anteiso-C15: 0, C16: 0, anteiso-C17: 0, iso-C16: 0, iso-C15: 0和C16: 1 ω7c。该菌株的呼吸醌类包括MK-9 (H6)、MK-9 (H8)、MK-10 (H6)和MK-10 (H8)。利用atpD、gyrB、recA、rpoB和trpB序列的多位点分析表明,该菌株在链霉菌属中形成了一个独立的分支。在菌株A1-08T及其最近亲缘菌株基因组中鉴定出环境胁迫响应和适应的潜在基因。全基因组测序结果表明,A1-08T为链霉菌内的新种,与最近型菌株Streptomyces olivaceus NRRL B-3009T的数字dna杂交率为57.80%,平均nt同源度为93.03%。在此,提出了源自菲律宾马荣火山的链霉菌(Streptomyces mayonensis sp. nov.)的命名(型菌株A1-08T =JCM 36345, =DSM 118395)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

<i>Streptomyces mayonensis</i> sp. nov., isolated from the volcanic soils of Mt. Mayon, Philippines.

<i>Streptomyces mayonensis</i> sp. nov., isolated from the volcanic soils of Mt. Mayon, Philippines.

<i>Streptomyces mayonensis</i> sp. nov., isolated from the volcanic soils of Mt. Mayon, Philippines.

Streptomyces mayonensis sp. nov., isolated from the volcanic soils of Mt. Mayon, Philippines.

A novel actinobacterium, designated as strain A1-08T, was isolated from the volcanic soils of Mt. Mayon, Philippines. Phylogenetic analysis of the 16S rRNA gene sequence revealed that strain A1-08T belonged to the genus Streptomyces with sequence similarity with Streptomyces djakartensis NBRC 15409T (99.02%), Streptomyces tuirus NBRC 15617T (98.88%) and Streptomyces mutabilis NBRC 12800T (98.81%). Polyphasic characterization demonstrated distinct morphological, cultural, physiological and biochemical features with unique lipid and fatty acid profiles and respiratory quinones. The major phospholipids of strain A1-08T are diphosphatidylglycerol, phosphatidylethanolamine, glycophospholipid with mannose and/or galactose and unidentified lipids such as aminolipid and phospholipid. The major cellular fatty acids were anteiso-C15 : 0, C16 : 0, anteiso-C17 : 0, iso-C16 : 0, iso-C15 : 0 and C16 : 1ω7c. The respiratory quinones of the strain include MK-9 (H6), MK-9 (H8), MK-10 (H6) and MK-10 (H8). Multilocus analysis using the concatenated sequences of atpD, gyrB, recA, rpoB and trpB showed that the strain formed a distinct branch in the genus Streptomyces. Potential genes for environmental stress response and adaptation were identified in the genome of strain A1-08T and its closest relative strains. Whole-genome sequencing confirmed A1-08T as a novel species within Streptomyces with 57.80% digital DNA-DNA hybridization and 93.03% average nt identity value with the closest type strain Streptomyces olivaceus NRRL B-3009T. The name Streptomyces mayonensis sp. nov., derived from the Mayon Volcano in the Philippines, is hereby proposed (type strain A1-08T =JCM 36345, =DSM 118395).

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
5.20
自引率
21.40%
发文量
426
审稿时长
1 months
期刊介绍: Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names. The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including: Identification, characterisation and culture preservation Microbial evolution and biodiversity Molecular environmental work with strong taxonomic or evolutionary content Nomenclature Taxonomy and phylogenetics.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信