{"title":"janthinus Streptomyces (Artamonova and Krassilnikov 1960)和Pridham 1970 (Approved Lists 1980)作为violaceus Streptomyces (Rossi Doria 1891)和Waksman 1953 (Approved Lists 1980)的后异型同义词的建议以及对violaceus Streptomyces的修订描述。","authors":"Kaiqin Li, Ying Qian, Bin Li, Wei Liang","doi":"10.1099/ijsem.0.006892","DOIUrl":null,"url":null,"abstract":"<p><p>The taxonomic relationship between <i>Streptomyces janthinus</i> and <i>Streptomyces violaceus</i> was re-evaluated using comparative genome analysis. The 16S rRNA gene sequence analysis indicated that the type strains of <i>S. janthinus</i> and <i>S. violaceus</i> shared 100% sequence similarity. Phylogenetic trees based on 16S rRNA gene sequences indicated that <i>S. janthinus</i> JCM 4387<sup>T</sup> was clustered together with <i>S. violaceus</i> CGMCC 4.1456<sup>T</sup>. These results suggested that <i>S. janthinus</i> JCM 4387<sup>T</sup> was most closely related to <i>S. violaceus</i> CGMCC 4.1456<sup>T</sup>. The phylogenomic tree also supported this result. The average nt identity (ANI) and dDDH values between these two strains were 97.89% and 81.0%, respectively, well more than the 96.7% ANI and 70% dDDH threshold values for <i>Streptomyces</i> species delineation, confirming that <i>S. janthinus</i> JCM 4387<sup>T</sup> and <i>S. violaceus</i> CGMCC 4.1456<sup>T</sup> belong to the same genomic species. In addition, a comprehensive comparison of phenotypic, chemotaxonomic and genomic characteristics also supported this conclusion. According to all these results and Rule 42 of the Bacteriological Code, we propose <i>S. janthinus</i> (Artamonova and Krassilnikov 1960) Pridham 1970 (Approved Lists 1980) as a later heterotypic synonym of <i>S. violaceus</i> (Rossi Doria 1891) Waksman 1953 (Approved Lists 1980).</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"75 9","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Proposal of <i>Streptomyces janthinus</i> (Artamonova and Krassilnikov 1960) Pridham 1970 (Approved Lists 1980) as a later heterotypic synonym of <i>Streptomyces violaceus</i> (Rossi Doria 1891) Waksman 1953 (Approved Lists 1980) and an emended description of <i>Streptomyces violaceus</i>.\",\"authors\":\"Kaiqin Li, Ying Qian, Bin Li, Wei Liang\",\"doi\":\"10.1099/ijsem.0.006892\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The taxonomic relationship between <i>Streptomyces janthinus</i> and <i>Streptomyces violaceus</i> was re-evaluated using comparative genome analysis. The 16S rRNA gene sequence analysis indicated that the type strains of <i>S. janthinus</i> and <i>S. violaceus</i> shared 100% sequence similarity. Phylogenetic trees based on 16S rRNA gene sequences indicated that <i>S. janthinus</i> JCM 4387<sup>T</sup> was clustered together with <i>S. violaceus</i> CGMCC 4.1456<sup>T</sup>. These results suggested that <i>S. janthinus</i> JCM 4387<sup>T</sup> was most closely related to <i>S. violaceus</i> CGMCC 4.1456<sup>T</sup>. The phylogenomic tree also supported this result. The average nt identity (ANI) and dDDH values between these two strains were 97.89% and 81.0%, respectively, well more than the 96.7% ANI and 70% dDDH threshold values for <i>Streptomyces</i> species delineation, confirming that <i>S. janthinus</i> JCM 4387<sup>T</sup> and <i>S. violaceus</i> CGMCC 4.1456<sup>T</sup> belong to the same genomic species. In addition, a comprehensive comparison of phenotypic, chemotaxonomic and genomic characteristics also supported this conclusion. According to all these results and Rule 42 of the Bacteriological Code, we propose <i>S. janthinus</i> (Artamonova and Krassilnikov 1960) Pridham 1970 (Approved Lists 1980) as a later heterotypic synonym of <i>S. violaceus</i> (Rossi Doria 1891) Waksman 1953 (Approved Lists 1980).</p>\",\"PeriodicalId\":14390,\"journal\":{\"name\":\"International journal of systematic and evolutionary microbiology\",\"volume\":\"75 9\",\"pages\":\"\"},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2025-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International journal of systematic and evolutionary microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006892\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International journal of systematic and evolutionary microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006892","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Proposal of Streptomyces janthinus (Artamonova and Krassilnikov 1960) Pridham 1970 (Approved Lists 1980) as a later heterotypic synonym of Streptomyces violaceus (Rossi Doria 1891) Waksman 1953 (Approved Lists 1980) and an emended description of Streptomyces violaceus.
The taxonomic relationship between Streptomyces janthinus and Streptomyces violaceus was re-evaluated using comparative genome analysis. The 16S rRNA gene sequence analysis indicated that the type strains of S. janthinus and S. violaceus shared 100% sequence similarity. Phylogenetic trees based on 16S rRNA gene sequences indicated that S. janthinus JCM 4387T was clustered together with S. violaceus CGMCC 4.1456T. These results suggested that S. janthinus JCM 4387T was most closely related to S. violaceus CGMCC 4.1456T. The phylogenomic tree also supported this result. The average nt identity (ANI) and dDDH values between these two strains were 97.89% and 81.0%, respectively, well more than the 96.7% ANI and 70% dDDH threshold values for Streptomyces species delineation, confirming that S. janthinus JCM 4387T and S. violaceus CGMCC 4.1456T belong to the same genomic species. In addition, a comprehensive comparison of phenotypic, chemotaxonomic and genomic characteristics also supported this conclusion. According to all these results and Rule 42 of the Bacteriological Code, we propose S. janthinus (Artamonova and Krassilnikov 1960) Pridham 1970 (Approved Lists 1980) as a later heterotypic synonym of S. violaceus (Rossi Doria 1891) Waksman 1953 (Approved Lists 1980).
期刊介绍:
Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names.
The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including:
Identification, characterisation and culture preservation
Microbial evolution and biodiversity
Molecular environmental work with strong taxonomic or evolutionary content
Nomenclature
Taxonomy and phylogenetics.