Kiranmayi Vedantham, Longgang Niu, Ryan Ma, Liam Connelly, Anusha Nagella, Sijie Jason Wang, Zhao-Wen Wang
{"title":"Track-A-Worm 2.0:用于量化秀丽隐杆线虫运动、弯曲、睡眠和动作电位特性的软件套件。","authors":"Kiranmayi Vedantham, Longgang Niu, Ryan Ma, Liam Connelly, Anusha Nagella, Sijie Jason Wang, Zhao-Wen Wang","doi":"10.1523/ENEURO.0224-25.2025","DOIUrl":null,"url":null,"abstract":"<p><p>Comparative analyses of locomotor behavior and cellular electrical properties between wild-type and mutant <i>Caenorhabditis elegans</i> are crucial for exploring the gene basis of behaviors and the underlying cellular mechanisms. Although many tools have been developed by research labs and companies, their application is often hindered by implementation difficulties or lack of features specifically suited for <i>C. elegans</i> Our system addresses these challenges with three key components: <i>WormTracker</i>, <i>SleepTracker</i>, and <i>Action Potential (AP) Analyzer</i> <i>WormTracker</i> accurately quantifies a comprehensive set of locomotor and body bending metrics, incorporates user-identified dorsal and ventral orientation based on microscopic observation, continuously tracks the animal using a motorized stage, and seamlessly integrates external devices, such as a light source for optogenetic stimulation. <i>SleepTracker</i> detects and quantifies sleep-like behavior in freely moving animals. <i>AP Analyzer</i> assesses the resting membrane potential, afterhyperpolarization level, and various AP properties, including threshold, amplitude, mid-peak width, rise and decay times, and maximum and minimum slopes. Importantly, it addresses the challenge of AP threshold quantification posed by the absence of a preupstroke inflection point. This system is potentially a valuable tool for many <i>C. elegans</i> research labs due to its powerful functionality and ease of implementation.</p>","PeriodicalId":11617,"journal":{"name":"eNeuro","volume":"12 8","pages":""},"PeriodicalIF":2.7000,"publicationDate":"2025-08-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12393025/pdf/","citationCount":"0","resultStr":"{\"title\":\"<i>Track-A-Worm 2.0</i>: A Software Suite for Quantifying Properties of <i>C. elegans</i> Locomotion, Bending, Sleep, and Action Potentials.\",\"authors\":\"Kiranmayi Vedantham, Longgang Niu, Ryan Ma, Liam Connelly, Anusha Nagella, Sijie Jason Wang, Zhao-Wen Wang\",\"doi\":\"10.1523/ENEURO.0224-25.2025\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Comparative analyses of locomotor behavior and cellular electrical properties between wild-type and mutant <i>Caenorhabditis elegans</i> are crucial for exploring the gene basis of behaviors and the underlying cellular mechanisms. Although many tools have been developed by research labs and companies, their application is often hindered by implementation difficulties or lack of features specifically suited for <i>C. elegans</i> Our system addresses these challenges with three key components: <i>WormTracker</i>, <i>SleepTracker</i>, and <i>Action Potential (AP) Analyzer</i> <i>WormTracker</i> accurately quantifies a comprehensive set of locomotor and body bending metrics, incorporates user-identified dorsal and ventral orientation based on microscopic observation, continuously tracks the animal using a motorized stage, and seamlessly integrates external devices, such as a light source for optogenetic stimulation. <i>SleepTracker</i> detects and quantifies sleep-like behavior in freely moving animals. <i>AP Analyzer</i> assesses the resting membrane potential, afterhyperpolarization level, and various AP properties, including threshold, amplitude, mid-peak width, rise and decay times, and maximum and minimum slopes. Importantly, it addresses the challenge of AP threshold quantification posed by the absence of a preupstroke inflection point. This system is potentially a valuable tool for many <i>C. elegans</i> research labs due to its powerful functionality and ease of implementation.</p>\",\"PeriodicalId\":11617,\"journal\":{\"name\":\"eNeuro\",\"volume\":\"12 8\",\"pages\":\"\"},\"PeriodicalIF\":2.7000,\"publicationDate\":\"2025-08-27\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12393025/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"eNeuro\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1523/ENEURO.0224-25.2025\",\"RegionNum\":3,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/8/1 0:00:00\",\"PubModel\":\"Print\",\"JCR\":\"Q3\",\"JCRName\":\"NEUROSCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"eNeuro","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1523/ENEURO.0224-25.2025","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/8/1 0:00:00","PubModel":"Print","JCR":"Q3","JCRName":"NEUROSCIENCES","Score":null,"Total":0}
Track-A-Worm 2.0: A Software Suite for Quantifying Properties of C. elegans Locomotion, Bending, Sleep, and Action Potentials.
Comparative analyses of locomotor behavior and cellular electrical properties between wild-type and mutant Caenorhabditis elegans are crucial for exploring the gene basis of behaviors and the underlying cellular mechanisms. Although many tools have been developed by research labs and companies, their application is often hindered by implementation difficulties or lack of features specifically suited for C. elegans Our system addresses these challenges with three key components: WormTracker, SleepTracker, and Action Potential (AP) AnalyzerWormTracker accurately quantifies a comprehensive set of locomotor and body bending metrics, incorporates user-identified dorsal and ventral orientation based on microscopic observation, continuously tracks the animal using a motorized stage, and seamlessly integrates external devices, such as a light source for optogenetic stimulation. SleepTracker detects and quantifies sleep-like behavior in freely moving animals. AP Analyzer assesses the resting membrane potential, afterhyperpolarization level, and various AP properties, including threshold, amplitude, mid-peak width, rise and decay times, and maximum and minimum slopes. Importantly, it addresses the challenge of AP threshold quantification posed by the absence of a preupstroke inflection point. This system is potentially a valuable tool for many C. elegans research labs due to its powerful functionality and ease of implementation.
期刊介绍:
An open-access journal from the Society for Neuroscience, eNeuro publishes high-quality, broad-based, peer-reviewed research focused solely on the field of neuroscience. eNeuro embodies an emerging scientific vision that offers a new experience for authors and readers, all in support of the Society’s mission to advance understanding of the brain and nervous system.