Track-A-Worm 2.0:用于量化秀丽隐杆线虫运动、弯曲、睡眠和动作电位特性的软件套件。

IF 2.7 3区 医学 Q3 NEUROSCIENCES
eNeuro Pub Date : 2025-08-27 Print Date: 2025-08-01 DOI:10.1523/ENEURO.0224-25.2025
Kiranmayi Vedantham, Longgang Niu, Ryan Ma, Liam Connelly, Anusha Nagella, Sijie Jason Wang, Zhao-Wen Wang
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引用次数: 0

摘要

比较分析野生型和突变型秀丽隐杆线虫的运动行为和细胞电学特性对于探索行为的基因基础和潜在的细胞机制至关重要。尽管研究实验室和公司已经开发了许多工具,但它们的应用往往受到实施困难或缺乏专门适合秀丽隐杆线虫的功能的阻碍。我们的系统通过三个关键组件解决了这些挑战:WormTracker可以精确地量化一整套运动和身体弯曲指标,结合用户识别的基于显微镜观察的背侧和腹侧方向,使用电动平台持续跟踪动物,并无缝集成外部设备,如光遗传刺激的光源。睡眠追踪器检测并量化自由运动动物的睡眠行为。AP分析仪评估静息膜电位、超极化后水平和各种AP特性,包括阈值、振幅、峰中宽度、上升和衰减时间、最大和最小斜率。重要的是,它解决了由于缺乏上冲程前拐点而造成的AP阈值量化的挑战。该系统功能强大,易于实现,是许多秀丽隐杆线虫研究实验室潜在的有价值的工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Track-A-Worm 2.0: A Software Suite for Quantifying Properties of C. elegans Locomotion, Bending, Sleep, and Action Potentials.

Comparative analyses of locomotor behavior and cellular electrical properties between wild-type and mutant Caenorhabditis elegans are crucial for exploring the gene basis of behaviors and the underlying cellular mechanisms. Although many tools have been developed by research labs and companies, their application is often hindered by implementation difficulties or lack of features specifically suited for C. elegans Our system addresses these challenges with three key components: WormTracker, SleepTracker, and Action Potential (AP) Analyzer WormTracker accurately quantifies a comprehensive set of locomotor and body bending metrics, incorporates user-identified dorsal and ventral orientation based on microscopic observation, continuously tracks the animal using a motorized stage, and seamlessly integrates external devices, such as a light source for optogenetic stimulation. SleepTracker detects and quantifies sleep-like behavior in freely moving animals. AP Analyzer assesses the resting membrane potential, afterhyperpolarization level, and various AP properties, including threshold, amplitude, mid-peak width, rise and decay times, and maximum and minimum slopes. Importantly, it addresses the challenge of AP threshold quantification posed by the absence of a preupstroke inflection point. This system is potentially a valuable tool for many C. elegans research labs due to its powerful functionality and ease of implementation.

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来源期刊
eNeuro
eNeuro Neuroscience-General Neuroscience
CiteScore
5.00
自引率
2.90%
发文量
486
审稿时长
16 weeks
期刊介绍: An open-access journal from the Society for Neuroscience, eNeuro publishes high-quality, broad-based, peer-reviewed research focused solely on the field of neuroscience. eNeuro embodies an emerging scientific vision that offers a new experience for authors and readers, all in support of the Society’s mission to advance understanding of the brain and nervous system.
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