{"title":"大语言模型引导自动反应路径探索。","authors":"Ruzhao Chen, Yubang Liu, Zhe Chen, Yinwu Li, Fuyi Yang, Jiaxin Lin, Zhuofeng Ke","doi":"10.1038/s42004-025-01630-y","DOIUrl":null,"url":null,"abstract":"<p><p>Fast and efficient automated exploration of reaction pathways is essential for studying reaction mechanisms and advancing data-driven approaches for reaction development and catalyst design. Here, we present a new program (utilizing Python and Fortran), capable of conducting automated, fast, and efficient exploration of reaction pathways for potential energy surfaces (PES) studies. This program integrates quantum mechanics and rule-based methodologies, underpinned by a Large Language Model-assisted chemical logic. Both active-learning methods in transition states sampling and parallel multi-step reaction searches with efficient filtering help enhance efficiency and accelerate PES searching. Its effectiveness and versatility in automating searches are exemplified through case studies of multi-step reactions, including the organic cycloaddition reaction, asymmetric Mannich-type reaction, and organometallic Pt-catalyzed reaction. ARplorer's capability to scale up for high-throughput screening significantly enhances its utility, positioning it as an efficient tool for data-driven reaction development and catalyst design.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"255"},"PeriodicalIF":6.2000,"publicationDate":"2025-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12375046/pdf/","citationCount":"0","resultStr":"{\"title\":\"Large language model guided automated reaction pathway exploration.\",\"authors\":\"Ruzhao Chen, Yubang Liu, Zhe Chen, Yinwu Li, Fuyi Yang, Jiaxin Lin, Zhuofeng Ke\",\"doi\":\"10.1038/s42004-025-01630-y\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Fast and efficient automated exploration of reaction pathways is essential for studying reaction mechanisms and advancing data-driven approaches for reaction development and catalyst design. Here, we present a new program (utilizing Python and Fortran), capable of conducting automated, fast, and efficient exploration of reaction pathways for potential energy surfaces (PES) studies. This program integrates quantum mechanics and rule-based methodologies, underpinned by a Large Language Model-assisted chemical logic. Both active-learning methods in transition states sampling and parallel multi-step reaction searches with efficient filtering help enhance efficiency and accelerate PES searching. Its effectiveness and versatility in automating searches are exemplified through case studies of multi-step reactions, including the organic cycloaddition reaction, asymmetric Mannich-type reaction, and organometallic Pt-catalyzed reaction. ARplorer's capability to scale up for high-throughput screening significantly enhances its utility, positioning it as an efficient tool for data-driven reaction development and catalyst design.</p>\",\"PeriodicalId\":10529,\"journal\":{\"name\":\"Communications Chemistry\",\"volume\":\"8 1\",\"pages\":\"255\"},\"PeriodicalIF\":6.2000,\"publicationDate\":\"2025-08-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12375046/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Communications Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1038/s42004-025-01630-y\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Communications Chemistry","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1038/s42004-025-01630-y","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
Large language model guided automated reaction pathway exploration.
Fast and efficient automated exploration of reaction pathways is essential for studying reaction mechanisms and advancing data-driven approaches for reaction development and catalyst design. Here, we present a new program (utilizing Python and Fortran), capable of conducting automated, fast, and efficient exploration of reaction pathways for potential energy surfaces (PES) studies. This program integrates quantum mechanics and rule-based methodologies, underpinned by a Large Language Model-assisted chemical logic. Both active-learning methods in transition states sampling and parallel multi-step reaction searches with efficient filtering help enhance efficiency and accelerate PES searching. Its effectiveness and versatility in automating searches are exemplified through case studies of multi-step reactions, including the organic cycloaddition reaction, asymmetric Mannich-type reaction, and organometallic Pt-catalyzed reaction. ARplorer's capability to scale up for high-throughput screening significantly enhances its utility, positioning it as an efficient tool for data-driven reaction development and catalyst design.
期刊介绍:
Communications Chemistry is an open access journal from Nature Research publishing high-quality research, reviews and commentary in all areas of the chemical sciences. Research papers published by the journal represent significant advances bringing new chemical insight to a specialized area of research. We also aim to provide a community forum for issues of importance to all chemists, regardless of sub-discipline.