通过联合系统生物学方法鉴定与帕金森病和黑色素瘤进展和预后相关的潜在生物标志物。

IF 2.7 4区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Ankita Murmu, Riddhi Upadhyay, Murugan Sevanan, Muthu Kumar Thirunavukkarasu
{"title":"通过联合系统生物学方法鉴定与帕金森病和黑色素瘤进展和预后相关的潜在生物标志物。","authors":"Ankita Murmu, Riddhi Upadhyay, Murugan Sevanan, Muthu Kumar Thirunavukkarasu","doi":"10.1002/bab.70036","DOIUrl":null,"url":null,"abstract":"<p><p>Parkinson's disease (PD) and melanoma are considered high risk in affecting an individual's health. The association between PD and melanoma has been reported with consistent results by various epidemiological studies. The identification of differentially expressed genes (DEGs) and pathways between the two diseases can support the findings of the epidemiological studies. Transcriptomics studies play a vital role in investigating DEGs with better specificity and sensitivity. Hence, we have performed transcriptomic data analysis to discover the gene expression profiles and significant pathways and provide insights into the relationship between PD and melanoma. The DEG analysis revealed that genes, such as CLU, glial fibrillary acidic protein (GFAP), and bone morphogenetic protein 6 (BMP6), highly expressed in melanoma, were associated with the progression of PD and genes such as BAG6, heat shock protein family A member 1B (HSPA1B), and ubiquitin-conjugating enzyme E2C (UBE2C), highly expressed in PD, were associated with the progression of melanoma based on evidence from previous studies. Out of the significant common KEGG pathways observed between PD and melanoma, tryptophan metabolism, steroid biosynthesis, peroxisome proliferator-activated receptor (PPAR) signaling and arginine biosynthesis were directly related to the pathogenesis and progression of the two diseases. Therefore, these findings have elucidated the involvement of multiple genes and pathways in the association of PD and melanoma.</p>","PeriodicalId":9274,"journal":{"name":"Biotechnology and applied biochemistry","volume":" ","pages":""},"PeriodicalIF":2.7000,"publicationDate":"2025-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Identification of Potential Biomarkers Related to the Progression and Prognosis of Parkinson's Disease and Melanoma via Combined System Biology Approaches.\",\"authors\":\"Ankita Murmu, Riddhi Upadhyay, Murugan Sevanan, Muthu Kumar Thirunavukkarasu\",\"doi\":\"10.1002/bab.70036\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Parkinson's disease (PD) and melanoma are considered high risk in affecting an individual's health. The association between PD and melanoma has been reported with consistent results by various epidemiological studies. The identification of differentially expressed genes (DEGs) and pathways between the two diseases can support the findings of the epidemiological studies. Transcriptomics studies play a vital role in investigating DEGs with better specificity and sensitivity. Hence, we have performed transcriptomic data analysis to discover the gene expression profiles and significant pathways and provide insights into the relationship between PD and melanoma. The DEG analysis revealed that genes, such as CLU, glial fibrillary acidic protein (GFAP), and bone morphogenetic protein 6 (BMP6), highly expressed in melanoma, were associated with the progression of PD and genes such as BAG6, heat shock protein family A member 1B (HSPA1B), and ubiquitin-conjugating enzyme E2C (UBE2C), highly expressed in PD, were associated with the progression of melanoma based on evidence from previous studies. Out of the significant common KEGG pathways observed between PD and melanoma, tryptophan metabolism, steroid biosynthesis, peroxisome proliferator-activated receptor (PPAR) signaling and arginine biosynthesis were directly related to the pathogenesis and progression of the two diseases. Therefore, these findings have elucidated the involvement of multiple genes and pathways in the association of PD and melanoma.</p>\",\"PeriodicalId\":9274,\"journal\":{\"name\":\"Biotechnology and applied biochemistry\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":2.7000,\"publicationDate\":\"2025-08-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biotechnology and applied biochemistry\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1002/bab.70036\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biotechnology and applied biochemistry","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1002/bab.70036","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

帕金森病(PD)和黑色素瘤被认为是影响个人健康的高风险疾病。帕金森病和黑色素瘤之间的关联已被各种流行病学研究报道,结果一致。鉴定两种疾病之间的差异表达基因(DEGs)和途径可以支持流行病学研究的结果。转录组学研究在研究deg中发挥着至关重要的作用,具有更好的特异性和敏感性。因此,我们进行了转录组数据分析,以发现基因表达谱和重要途径,并为PD和黑色素瘤之间的关系提供见解。DEG分析显示,在黑色素瘤中高表达的基因如CLU、胶质纤维酸性蛋白(GFAP)和骨形态发生蛋白6 (BMP6)与PD的进展有关,而在PD中高表达的基因如BAG6、热休克蛋白家族A成员1B (HSPA1B)和泛素偶联酶E2C (UBE2C)与黑色素瘤的进展有关。在PD与黑色素瘤之间观察到的重要的共同KEGG通路中,色氨酸代谢、类固醇生物合成、过氧化物酶体增殖物激活受体(PPAR)信号传导和精氨酸生物合成与两种疾病的发病和进展直接相关。因此,这些发现阐明了PD与黑色素瘤的关联涉及多种基因和途径。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification of Potential Biomarkers Related to the Progression and Prognosis of Parkinson's Disease and Melanoma via Combined System Biology Approaches.

Parkinson's disease (PD) and melanoma are considered high risk in affecting an individual's health. The association between PD and melanoma has been reported with consistent results by various epidemiological studies. The identification of differentially expressed genes (DEGs) and pathways between the two diseases can support the findings of the epidemiological studies. Transcriptomics studies play a vital role in investigating DEGs with better specificity and sensitivity. Hence, we have performed transcriptomic data analysis to discover the gene expression profiles and significant pathways and provide insights into the relationship between PD and melanoma. The DEG analysis revealed that genes, such as CLU, glial fibrillary acidic protein (GFAP), and bone morphogenetic protein 6 (BMP6), highly expressed in melanoma, were associated with the progression of PD and genes such as BAG6, heat shock protein family A member 1B (HSPA1B), and ubiquitin-conjugating enzyme E2C (UBE2C), highly expressed in PD, were associated with the progression of melanoma based on evidence from previous studies. Out of the significant common KEGG pathways observed between PD and melanoma, tryptophan metabolism, steroid biosynthesis, peroxisome proliferator-activated receptor (PPAR) signaling and arginine biosynthesis were directly related to the pathogenesis and progression of the two diseases. Therefore, these findings have elucidated the involvement of multiple genes and pathways in the association of PD and melanoma.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Biotechnology and applied biochemistry
Biotechnology and applied biochemistry 工程技术-生化与分子生物学
CiteScore
6.00
自引率
7.10%
发文量
117
审稿时长
3 months
期刊介绍: Published since 1979, Biotechnology and Applied Biochemistry is dedicated to the rapid publication of high quality, significant research at the interface between life sciences and their technological exploitation. The Editors will consider papers for publication based on their novelty and impact as well as their contribution to the advancement of medical biotechnology and industrial biotechnology, covering cutting-edge research in synthetic biology, systems biology, metabolic engineering, bioengineering, biomaterials, biosensing, and nano-biotechnology.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信