空间引用多状态电流状态数据的单调单索引模型。

IF 1.7 4区 数学 Q3 BIOLOGY
Biometrics Pub Date : 2025-07-03 DOI:10.1093/biomtc/ujaf105
Snigdha Das, Minwoo Chae, Debdeep Pati, Dipankar Bandyopadhyay
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引用次数: 0

摘要

多状态疾病进展评估在生物医学研究中很常见,如牙周病(PD)。然而,多状态当前状态端点的存在使推理框架变得复杂,在已知的起始状态后,在随机检查时间内,每个受试者通过疾病状态的进展只有一个快照。此外,这些端点可以聚类,并在空间上关联,其中一组近端位置的牙齿(在受试者中)可能经历与远端位置的牙齿相似的PD状态。在一项记录PD进展的临床研究的激励下,我们提出了一个贝叶斯半参数加速失效时间模型,该模型具有逆wishart建议,用于适应(空间)随机效应和遵循Dirichlet过程混合高斯的灵活误差。为了临床可解释性,事件时间的系统分量使用单调单指标模型建模,(未知)链接函数通过一种新的集成基展开和基系数赋予约束高斯过程先验估计。除了建立参数可识别性之外,我们还通过椭圆切片采样、快速循环嵌入技术和硬约束平滑的组合提出了可扩展计算,从而可以直接估计参数、状态占用和转移概率。利用合成数据,研究了贝叶斯估计的有限样本性质及其在模型不规范情况下的性能。我们还通过实际临床PD数据集的应用来说明我们的方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A monotone single index model for spatially referenced multistate current status data.

Assessment of multistate disease progression is commonplace in biomedical research, such as in periodontal disease (PD). However, the presence of multistate current status endpoints, where only a single snapshot of each subject's progression through disease states is available at a random inspection time after a known starting state, complicates the inferential framework. In addition, these endpoints can be clustered, and spatially associated, where a group of proximally located teeth (within subjects) may experience similar PD status, compared to those distally located. Motivated by a clinical study recording PD progression, we propose a Bayesian semiparametric accelerated failure time model with an inverse-Wishart proposal for accommodating (spatial) random effects, and flexible errors that follow a Dirichlet process mixture of Gaussians. For clinical interpretability, the systematic component of the event times is modeled using a monotone single index model, with the (unknown) link function estimated via a novel integrated basis expansion and basis coefficients endowed with constrained Gaussian process priors. In addition to establishing parameter identifiability, we present scalable computing via a combination of elliptical slice sampling, fast circulant embedding techniques, and smoothing of hard constraints, leading to straightforward estimation of parameters, and state occupation and transition probabilities. Using synthetic data, we study the finite sample properties of our Bayesian estimates and their performance under model misspecification. We also illustrate our method via application to the real clinical PD dataset.

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来源期刊
Biometrics
Biometrics 生物-生物学
CiteScore
2.70
自引率
5.30%
发文量
178
审稿时长
4-8 weeks
期刊介绍: The International Biometric Society is an international society promoting the development and application of statistical and mathematical theory and methods in the biosciences, including agriculture, biomedical science and public health, ecology, environmental sciences, forestry, and allied disciplines. The Society welcomes as members statisticians, mathematicians, biological scientists, and others devoted to interdisciplinary efforts in advancing the collection and interpretation of information in the biosciences. The Society sponsors the biennial International Biometric Conference, held in sites throughout the world; through its National Groups and Regions, it also Society sponsors regional and local meetings.
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