Bin Chen , Yuxuan Zhang , Haochen Shi , Yujie Zeng , Huinan Yang
{"title":"基于深度学习的分子动力学模拟揭示了干酪根热解的复杂反应过程","authors":"Bin Chen , Yuxuan Zhang , Haochen Shi , Yujie Zeng , Huinan Yang","doi":"10.1016/j.jaap.2025.107341","DOIUrl":null,"url":null,"abstract":"<div><div>The performance of the instruments and operational handling inevitably introduce experimental errors, leading to an incomplete understanding of the kerogen pyrolysis mechanism. Data-driven deep learning offers the potential to address these challenges. Based on conventional experiments (<sup>13</sup>C-NMR, XPS, and FT-IR), this study constructed a molecular model of kerogen from Huadian oil shale. Subsequently, reactive molecular dynamics simulations were employed to simulate the pyrolysis process of the kerogen macromolecular model, yielding 40,483 stable and complex non-equilibrium structures during the pyrolysis process. For these structures, we utilized deep learning combined with quantum chemistry calculations to establish, for the first time, a high-precision pyrolysis potential energy model specific to kerogen molecules. This model reveals the pyrolysis mechanism at the atomic scale with significantly enhanced accuracy. By employing a data-driven approach, we reduced errors in the study of pyrolysis mechanisms caused by experimental instrumentation and manual operations. Furthermore, this method overcomes computational limitations inherent to traditional quantum chemistry and molecular dynamics, achieving a balance between computational accuracy and speed. This study not only provides a new perspective for using deep learning to tackle the challenges of non-equilibrium complex structures in computational chemistry but also unveils the kerogen pyrolysis mechanism at the atomic scale. It further advances the theoretical computational framework for regulating oil shale reaction processes.</div></div>","PeriodicalId":345,"journal":{"name":"Journal of Analytical and Applied Pyrolysis","volume":"193 ","pages":"Article 107341"},"PeriodicalIF":6.2000,"publicationDate":"2025-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Complex reaction processes in Kerogen pyrolysis unraveled by deep learning-based molecular dynamics simulation\",\"authors\":\"Bin Chen , Yuxuan Zhang , Haochen Shi , Yujie Zeng , Huinan Yang\",\"doi\":\"10.1016/j.jaap.2025.107341\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>The performance of the instruments and operational handling inevitably introduce experimental errors, leading to an incomplete understanding of the kerogen pyrolysis mechanism. Data-driven deep learning offers the potential to address these challenges. Based on conventional experiments (<sup>13</sup>C-NMR, XPS, and FT-IR), this study constructed a molecular model of kerogen from Huadian oil shale. Subsequently, reactive molecular dynamics simulations were employed to simulate the pyrolysis process of the kerogen macromolecular model, yielding 40,483 stable and complex non-equilibrium structures during the pyrolysis process. For these structures, we utilized deep learning combined with quantum chemistry calculations to establish, for the first time, a high-precision pyrolysis potential energy model specific to kerogen molecules. This model reveals the pyrolysis mechanism at the atomic scale with significantly enhanced accuracy. By employing a data-driven approach, we reduced errors in the study of pyrolysis mechanisms caused by experimental instrumentation and manual operations. Furthermore, this method overcomes computational limitations inherent to traditional quantum chemistry and molecular dynamics, achieving a balance between computational accuracy and speed. This study not only provides a new perspective for using deep learning to tackle the challenges of non-equilibrium complex structures in computational chemistry but also unveils the kerogen pyrolysis mechanism at the atomic scale. It further advances the theoretical computational framework for regulating oil shale reaction processes.</div></div>\",\"PeriodicalId\":345,\"journal\":{\"name\":\"Journal of Analytical and Applied Pyrolysis\",\"volume\":\"193 \",\"pages\":\"Article 107341\"},\"PeriodicalIF\":6.2000,\"publicationDate\":\"2025-08-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Analytical and Applied Pyrolysis\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0165237025003948\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, ANALYTICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Analytical and Applied Pyrolysis","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0165237025003948","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, ANALYTICAL","Score":null,"Total":0}
Complex reaction processes in Kerogen pyrolysis unraveled by deep learning-based molecular dynamics simulation
The performance of the instruments and operational handling inevitably introduce experimental errors, leading to an incomplete understanding of the kerogen pyrolysis mechanism. Data-driven deep learning offers the potential to address these challenges. Based on conventional experiments (13C-NMR, XPS, and FT-IR), this study constructed a molecular model of kerogen from Huadian oil shale. Subsequently, reactive molecular dynamics simulations were employed to simulate the pyrolysis process of the kerogen macromolecular model, yielding 40,483 stable and complex non-equilibrium structures during the pyrolysis process. For these structures, we utilized deep learning combined with quantum chemistry calculations to establish, for the first time, a high-precision pyrolysis potential energy model specific to kerogen molecules. This model reveals the pyrolysis mechanism at the atomic scale with significantly enhanced accuracy. By employing a data-driven approach, we reduced errors in the study of pyrolysis mechanisms caused by experimental instrumentation and manual operations. Furthermore, this method overcomes computational limitations inherent to traditional quantum chemistry and molecular dynamics, achieving a balance between computational accuracy and speed. This study not only provides a new perspective for using deep learning to tackle the challenges of non-equilibrium complex structures in computational chemistry but also unveils the kerogen pyrolysis mechanism at the atomic scale. It further advances the theoretical computational framework for regulating oil shale reaction processes.
期刊介绍:
The Journal of Analytical and Applied Pyrolysis (JAAP) is devoted to the publication of papers dealing with innovative applications of pyrolysis processes, the characterization of products related to pyrolysis reactions, and investigations of reaction mechanism. To be considered by JAAP, a manuscript should present significant progress in these topics. The novelty must be satisfactorily argued in the cover letter. A manuscript with a cover letter to the editor not addressing the novelty is likely to be rejected without review.