利用墨西哥海孢菌和helvetica海孢菌的描述扩大单型海孢菌属和Tumidithrix的物种多样性。

IF 2 3区 生物学 Q4 MICROBIOLOGY
Aniket Saraf, Boris Aleksovski, Eddy Blondet, Svetislav Krstić, Alexis Criscuolo, Muriel Gugger
{"title":"利用墨西哥海孢菌和helvetica海孢菌的描述扩大单型海孢菌属和Tumidithrix的物种多样性。","authors":"Aniket Saraf, Boris Aleksovski, Eddy Blondet, Svetislav Krstić, Alexis Criscuolo, Muriel Gugger","doi":"10.1099/ijsem.0.006869","DOIUrl":null,"url":null,"abstract":"<p><p>The taxonomic identity of two well-documented pseudanabaenalean strains, <i>Pseudanabaena</i> sp. PCC 7367<sup>T</sup> and <i>Pseudanabaena</i> sp. PCC 7403<sup>T</sup>, isolated from the samples collected from the surface of a snail shell in an intertidal zone and sphagnum bog, respectively, was reassessed using a polyphasic approach. The results from the morphological, phylogenetic, ITS rRNA and genomic analyses confirmed that PCC 7367<sup>T</sup> (=BACA0810<sup>T</sup>) and PCC 7403<sup>T</sup> (=BACA0811<sup>T</sup>) represent novel species of the monotypic pseudanabaenalean genera <i>Thalassoporum</i> and <i>Tumidithrix</i>, respectively, for which we propose the names <i>Thalassoporum mexicanum</i> sp. nov. and <i>Tumidithrix helvetica</i> sp. nov. in accordance with the International Code of Nomenclature of Prokaryotes. The analysis of the 16S-23S ITS rRNA region, a widely used genetic marker for the delineation of closely related species, effectively distinguished the <i>Thalassoporum</i> species. However, the closely related species within <i>Tumidithrix</i> could not be demarcated using the currently accepted nucleotide dissimilarity cutoff for species delineation but were clearly distinguished through genomic analyses. Accordingly, a revised ITS rRNA nucleotide dissimilarity cutoff is proposed for species delineation within the genus <i>Tumidithrix</i>. Furthermore, genomic investigations revealed that the predicted biosynthetic gene clusters in the genome assemblies of PCC 7367<sup>T</sup> and PCC 7403<sup>T</sup> were not associated with any known natural products.</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"75 8","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Expanding species diversity in the monotypic genera <i>Thalassoporum</i> and <i>Tumidithrix</i> (<i>Pseudanabaenales</i>, <i>Cyanobacteriota</i>) with the description of <i>Thalassoporum mexicanum</i> sp. nov. and <i>Tumidithrix helvetica</i> sp. nov.\",\"authors\":\"Aniket Saraf, Boris Aleksovski, Eddy Blondet, Svetislav Krstić, Alexis Criscuolo, Muriel Gugger\",\"doi\":\"10.1099/ijsem.0.006869\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The taxonomic identity of two well-documented pseudanabaenalean strains, <i>Pseudanabaena</i> sp. PCC 7367<sup>T</sup> and <i>Pseudanabaena</i> sp. PCC 7403<sup>T</sup>, isolated from the samples collected from the surface of a snail shell in an intertidal zone and sphagnum bog, respectively, was reassessed using a polyphasic approach. The results from the morphological, phylogenetic, ITS rRNA and genomic analyses confirmed that PCC 7367<sup>T</sup> (=BACA0810<sup>T</sup>) and PCC 7403<sup>T</sup> (=BACA0811<sup>T</sup>) represent novel species of the monotypic pseudanabaenalean genera <i>Thalassoporum</i> and <i>Tumidithrix</i>, respectively, for which we propose the names <i>Thalassoporum mexicanum</i> sp. nov. and <i>Tumidithrix helvetica</i> sp. nov. in accordance with the International Code of Nomenclature of Prokaryotes. The analysis of the 16S-23S ITS rRNA region, a widely used genetic marker for the delineation of closely related species, effectively distinguished the <i>Thalassoporum</i> species. However, the closely related species within <i>Tumidithrix</i> could not be demarcated using the currently accepted nucleotide dissimilarity cutoff for species delineation but were clearly distinguished through genomic analyses. Accordingly, a revised ITS rRNA nucleotide dissimilarity cutoff is proposed for species delineation within the genus <i>Tumidithrix</i>. Furthermore, genomic investigations revealed that the predicted biosynthetic gene clusters in the genome assemblies of PCC 7367<sup>T</sup> and PCC 7403<sup>T</sup> were not associated with any known natural products.</p>\",\"PeriodicalId\":14390,\"journal\":{\"name\":\"International journal of systematic and evolutionary microbiology\",\"volume\":\"75 8\",\"pages\":\"\"},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2025-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International journal of systematic and evolutionary microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006869\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International journal of systematic and evolutionary microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006869","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

本文采用多相法对从潮间带和泥沼蜗牛壳表面分离得到的两株假假abaaena sp. PCC 7367T和假假abaena sp. PCC 7403T进行了分类鉴定。形态学、系统发育、ITS rRNA和基因组学分析结果证实,PCC 7367T (=BACA0810T)和PCC 7403T (=BACA0811T)分别为单型拟拟藻属Thalassoporum和Tumidithrix的新种,并根据《国际原核生物命名法》将其命名为Thalassoporum mexicanum sp. 11和Tumidithrix helvetica sp. 11。16S-23S ITS rRNA区域是广泛用于近缘种划分的遗传标记,通过对该区域的分析,有效地区分了Thalassoporum的种。然而,用目前公认的核苷酸不相似性截断法无法对Tumidithrix内的近缘种进行划分,但通过基因组分析可以明确区分。因此,一个修订ITS rRNA核苷酸不相似的切断被提议在属Tumidithrix的物种划定。此外,基因组研究表明,PCC 7367T和PCC 7403T基因组中预测的生物合成基因簇与任何已知的天然产物无关。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Expanding species diversity in the monotypic genera Thalassoporum and Tumidithrix (Pseudanabaenales, Cyanobacteriota) with the description of Thalassoporum mexicanum sp. nov. and Tumidithrix helvetica sp. nov.

The taxonomic identity of two well-documented pseudanabaenalean strains, Pseudanabaena sp. PCC 7367T and Pseudanabaena sp. PCC 7403T, isolated from the samples collected from the surface of a snail shell in an intertidal zone and sphagnum bog, respectively, was reassessed using a polyphasic approach. The results from the morphological, phylogenetic, ITS rRNA and genomic analyses confirmed that PCC 7367T (=BACA0810T) and PCC 7403T (=BACA0811T) represent novel species of the monotypic pseudanabaenalean genera Thalassoporum and Tumidithrix, respectively, for which we propose the names Thalassoporum mexicanum sp. nov. and Tumidithrix helvetica sp. nov. in accordance with the International Code of Nomenclature of Prokaryotes. The analysis of the 16S-23S ITS rRNA region, a widely used genetic marker for the delineation of closely related species, effectively distinguished the Thalassoporum species. However, the closely related species within Tumidithrix could not be demarcated using the currently accepted nucleotide dissimilarity cutoff for species delineation but were clearly distinguished through genomic analyses. Accordingly, a revised ITS rRNA nucleotide dissimilarity cutoff is proposed for species delineation within the genus Tumidithrix. Furthermore, genomic investigations revealed that the predicted biosynthetic gene clusters in the genome assemblies of PCC 7367T and PCC 7403T were not associated with any known natural products.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
5.20
自引率
21.40%
发文量
426
审稿时长
1 months
期刊介绍: Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names. The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including: Identification, characterisation and culture preservation Microbial evolution and biodiversity Molecular environmental work with strong taxonomic or evolutionary content Nomenclature Taxonomy and phylogenetics.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信