探索大分子系统振动特征的裁剪方法:简要综述

IF 2 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY
Subodh S Khire, Nityananda Sahu, Shridhar R Gadre
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引用次数: 0

摘要

由于相关量子化学方法的高计算尺度,它们在大分子系统中的应用提出了重大挑战,特别是对于红外(IR)和拉曼光谱的计算,这通常是非常昂贵的。基于片段的分子裁剪方法(MTA)是一种本土开发的方法,大大拓宽了这类研究的范围。基于mta的软件包MTASpec https://doi.org/10.17632/m5b5zhxkfh.1可以计算分子特性,如电子能量、大分子和分子簇的振动红外和拉曼光谱。这篇简短的评论提供了这种基于mta的研究的能力的全面概述,这些研究在计算效率和准确性之间取得了有效的平衡。本文还讨论了增强和扩大MTASpec在其他光谱方法中的适用性的未来方向,强调了其作为常规量子化学光谱研究的用户友好的黑盒工具的潜力。分子裁剪方法(MTA)和MTASpec代码提供了一种精确而廉价的计算空间扩展分子系统的振动红外和拉曼光谱的方法,使用最小的硬件。大分子簇和生物分子(如碳水化合物、多肽和蛋白质)的振动特征因此可以在气相和溶剂相中使用HF、DFT和扩展基集的相关方法进行探索。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Tailoring approach for exploring vibrational features of large molecular systems: A short review

Due to the high computational scaling of correlated quantum chemical methods, their application to large molecular systems presents significant challenges, particularly for computation of infrared (IR) and Raman spectra, which is often prohibitively expensive. The fragment-based Molecular Tailoring Approach (MTA), an indigenously developed methodology, has significantly broadened the scope of such studies. The MTA-based software package, MTASpec https://doi.org/10.17632/m5b5zhxkfh.1, enables the computation of molecular properties such as the electronic energy, vibrational IR and Raman spectra of large molecules and molecular clusters. This short review provides a comprehensive overview of the capabilities of such MTA-based studies which strike an effective balance between computational efficiency and accuracy. Future directions for enhancing and expanding the applicability of MTASpec for other spectroscopic methods are also discussed, highlighting its potential as a user-friendly, black-box tool for routine quantum chemical spectral investigations.

Graphical abstract

Molecular tailoring approach (MTA) and MTASpec codes provide an accurate yet inexpensive calculation of vibrational infrared and Raman spectra of spatially extended molecular systems using minimal hardware. Vibrational features of large molecular clusters and biomolecules such as carbohydrates, polypeptides and proteins can thereby be explored in gas- and solvent phases using HF, DFT and correlated methods with extended basis sets.

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来源期刊
Journal of Chemical Sciences
Journal of Chemical Sciences CHEMISTRY, MULTIDISCIPLINARY-
CiteScore
3.10
自引率
5.90%
发文量
107
审稿时长
1 months
期刊介绍: Journal of Chemical Sciences is a monthly journal published by the Indian Academy of Sciences. It formed part of the original Proceedings of the Indian Academy of Sciences – Part A, started by the Nobel Laureate Prof C V Raman in 1934, that was split in 1978 into three separate journals. It was renamed as Journal of Chemical Sciences in 2004. The journal publishes original research articles and rapid communications, covering all areas of chemical sciences. A significant feature of the journal is its special issues, brought out from time to time, devoted to conference symposia/proceedings in frontier areas of the subject, held not only in India but also in other countries.
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