DataMaze: Morris水迷宫实验的开源方法和数据存储库。

IF 7.9 1区 医学 Q1 BEHAVIORAL SCIENCES
Fuat Balcı , Turaç Aydoğan , Derin Kılıç , Dilay Tetik , İlke Kavuşturan , Feyzanur Polat Kamış , Rana Turmuş , Anisha Sharma , Melak Yossief
{"title":"DataMaze: Morris水迷宫实验的开源方法和数据存储库。","authors":"Fuat Balcı ,&nbsp;Turaç Aydoğan ,&nbsp;Derin Kılıç ,&nbsp;Dilay Tetik ,&nbsp;İlke Kavuşturan ,&nbsp;Feyzanur Polat Kamış ,&nbsp;Rana Turmuş ,&nbsp;Anisha Sharma ,&nbsp;Melak Yossief","doi":"10.1016/j.neubiorev.2025.106341","DOIUrl":null,"url":null,"abstract":"<div><div>A core limitation of behavioural neuroscience is the use of a given assay with very different apparatus specifications (e.g., size) and task parameters (e.g., retention intervals). Such procedural variability largely contributes to the outcome discrepancy across various studies and labs, thereby hindering research progress and the replicability of the outcomes (Crabbe et al., 1999). There is an immediate need for informative and inclusive quantitative benchmarks to design experiments, consider and analyze available data, and interpret the results accordingly, thereby reinforcing the FAIR principles. We took the first step in this direction by establishing a comprehensive database, starting with the Morris water maze (<em>DataMaze</em>). <em>DataMaze</em> contains and consolidates specifications and task parameters from thousands of papers (∼5000) and includes data along with related experimental manipulations. To reinforce this effort, we introduce easy-to-calculate indices that will help compare different studies in terms of parameters and outcomes, both prospectively and retrospectively. We also showcase the use of <em>DataMaze</em> for secondary data analysis. The ultimate aim of <em>DataMaze</em> is to transform research practices and reporting standards in behavioural neuroscience, such that researchers quantitatively utilize virtually all published information in evaluating their experiments, analyzing data, and interpreting results. <em>DataMaze</em> will remain a live and accessible platform that will grow retrospectively by incorporating information from additional studies and prospectively by accepting new and richer entries (e.g., individual subject-level data) from researchers.</div></div>","PeriodicalId":56105,"journal":{"name":"Neuroscience and Biobehavioral Reviews","volume":"177 ","pages":"Article 106341"},"PeriodicalIF":7.9000,"publicationDate":"2025-08-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"DataMaze: An open source methods and data repository for Morris water maze experiments\",\"authors\":\"Fuat Balcı ,&nbsp;Turaç Aydoğan ,&nbsp;Derin Kılıç ,&nbsp;Dilay Tetik ,&nbsp;İlke Kavuşturan ,&nbsp;Feyzanur Polat Kamış ,&nbsp;Rana Turmuş ,&nbsp;Anisha Sharma ,&nbsp;Melak Yossief\",\"doi\":\"10.1016/j.neubiorev.2025.106341\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>A core limitation of behavioural neuroscience is the use of a given assay with very different apparatus specifications (e.g., size) and task parameters (e.g., retention intervals). Such procedural variability largely contributes to the outcome discrepancy across various studies and labs, thereby hindering research progress and the replicability of the outcomes (Crabbe et al., 1999). There is an immediate need for informative and inclusive quantitative benchmarks to design experiments, consider and analyze available data, and interpret the results accordingly, thereby reinforcing the FAIR principles. We took the first step in this direction by establishing a comprehensive database, starting with the Morris water maze (<em>DataMaze</em>). <em>DataMaze</em> contains and consolidates specifications and task parameters from thousands of papers (∼5000) and includes data along with related experimental manipulations. To reinforce this effort, we introduce easy-to-calculate indices that will help compare different studies in terms of parameters and outcomes, both prospectively and retrospectively. We also showcase the use of <em>DataMaze</em> for secondary data analysis. The ultimate aim of <em>DataMaze</em> is to transform research practices and reporting standards in behavioural neuroscience, such that researchers quantitatively utilize virtually all published information in evaluating their experiments, analyzing data, and interpreting results. <em>DataMaze</em> will remain a live and accessible platform that will grow retrospectively by incorporating information from additional studies and prospectively by accepting new and richer entries (e.g., individual subject-level data) from researchers.</div></div>\",\"PeriodicalId\":56105,\"journal\":{\"name\":\"Neuroscience and Biobehavioral Reviews\",\"volume\":\"177 \",\"pages\":\"Article 106341\"},\"PeriodicalIF\":7.9000,\"publicationDate\":\"2025-08-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Neuroscience and Biobehavioral Reviews\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0149763425003422\",\"RegionNum\":1,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BEHAVIORAL SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Neuroscience and Biobehavioral Reviews","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0149763425003422","RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BEHAVIORAL SCIENCES","Score":null,"Total":0}
引用次数: 0

摘要

行为神经科学的一个核心限制是使用具有非常不同的仪器规格(例如,大小)和任务参数(例如,保留时间间隔)的给定分析。这种程序可变性在很大程度上导致了不同研究和实验室之间的结果差异,从而阻碍了研究进展和结果的可重复性(Crabbe et al. 1999)。目前迫切需要翔实和包容性的定量基准来设计实验,考虑和分析现有数据,并据此解释结果,从而加强公平原则。我们从Morris水迷宫(DataMaze)开始,建立了一个全面的数据库,迈出了这个方向的第一步。DataMaze包含并整合了数千篇论文(~5000篇)的规格和任务参数,并包括数据以及相关的实验操作。为了加强这一努力,我们引入了易于计算的指数,这些指数将有助于比较不同研究的参数和结果,无论是前瞻性的还是回顾性的。我们还展示了使用DataMaze进行辅助数据分析。DataMaze的最终目标是改变行为神经科学的研究实践和报告标准,这样研究人员就可以定量地利用几乎所有已发表的信息来评估他们的实验、分析数据和解释结果。DataMaze仍将是一个实时的、可访问的平台,它将通过整合来自其他研究的信息来回顾性地发展,并通过接受来自研究人员的新的、更丰富的条目(例如,单个主题级数据)来前瞻性地发展。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
DataMaze: An open source methods and data repository for Morris water maze experiments
A core limitation of behavioural neuroscience is the use of a given assay with very different apparatus specifications (e.g., size) and task parameters (e.g., retention intervals). Such procedural variability largely contributes to the outcome discrepancy across various studies and labs, thereby hindering research progress and the replicability of the outcomes (Crabbe et al., 1999). There is an immediate need for informative and inclusive quantitative benchmarks to design experiments, consider and analyze available data, and interpret the results accordingly, thereby reinforcing the FAIR principles. We took the first step in this direction by establishing a comprehensive database, starting with the Morris water maze (DataMaze). DataMaze contains and consolidates specifications and task parameters from thousands of papers (∼5000) and includes data along with related experimental manipulations. To reinforce this effort, we introduce easy-to-calculate indices that will help compare different studies in terms of parameters and outcomes, both prospectively and retrospectively. We also showcase the use of DataMaze for secondary data analysis. The ultimate aim of DataMaze is to transform research practices and reporting standards in behavioural neuroscience, such that researchers quantitatively utilize virtually all published information in evaluating their experiments, analyzing data, and interpreting results. DataMaze will remain a live and accessible platform that will grow retrospectively by incorporating information from additional studies and prospectively by accepting new and richer entries (e.g., individual subject-level data) from researchers.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
14.20
自引率
3.70%
发文量
466
审稿时长
6 months
期刊介绍: The official journal of the International Behavioral Neuroscience Society publishes original and significant review articles that explore the intersection between neuroscience and the study of psychological processes and behavior. The journal also welcomes articles that primarily focus on psychological processes and behavior, as long as they have relevance to one or more areas of neuroscience.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信