{"title":"通过增加养分有效性来限制稀有物种的扩散,导致生物膜之间的空间群落均匀性。","authors":"So-Yeon Jeong, Tae Gwan Kim","doi":"10.1093/jambio/lxaf209","DOIUrl":null,"url":null,"abstract":"<p><strong>Aim: </strong>Nutrient availability can influence microbial dispersal across local habitats. This study investigated how varying nutrient concentrations affect biofilm metacommunity assembly.</p><p><strong>Methods and results: </strong>Biofilms were developed from a bacterial polyculture on glass beads regularly arranged within experimental plates. Biofilm communities were analyzed using quantitative PCR and high-throughput sequencing. Bacterial abundance increased, following a positive power-law relationship with rising nutrient concentration (0.5-5.0 g l-1 of the R2A medium), peaking at 3.0 g l-1. Conversely, species richness and diversity exhibited unimodal patterns, with peaks at 1.0 g l-1. Dominant phylotypes (Stenotrophomonas, Acinetobacter, Pseudomonas, and Enterobacter) increased in abundance with increasing nutrient availability, whereas rare phylotypes (e.g. Massilia) declined. Community analyses revealed significant shifts in bacterial community structure with increasing nutrient availability, particularly pronounced between 0.5 and 1.0 g l-1. Spatial heterogeneity in both abundance and community composition decreased markedly from 0.5 to 1.0 g l-1, then showed a slight increase at higher nutrient concentrations. Additionally, lower-ranked individual phylotypes exhibited greater spatial heterogeneity at concentrations ≥1.0 g l-1. Finally, network size and complexity displayed a unimodal pattern with nutrient availability, peaking at 1.0 g l-1.</p><p><strong>Conclusion: </strong>Nutrient availability is a pivotal ecological factor shaping microbial dispersal, community assembly, and interspecies interactions within biofilm metacommunities.</p>","PeriodicalId":15036,"journal":{"name":"Journal of Applied Microbiology","volume":" ","pages":""},"PeriodicalIF":3.2000,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Dispersal limitation of rare species by increasing nutrient availability leads to the spatial community uniformity among biofilms.\",\"authors\":\"So-Yeon Jeong, Tae Gwan Kim\",\"doi\":\"10.1093/jambio/lxaf209\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Aim: </strong>Nutrient availability can influence microbial dispersal across local habitats. This study investigated how varying nutrient concentrations affect biofilm metacommunity assembly.</p><p><strong>Methods and results: </strong>Biofilms were developed from a bacterial polyculture on glass beads regularly arranged within experimental plates. Biofilm communities were analyzed using quantitative PCR and high-throughput sequencing. Bacterial abundance increased, following a positive power-law relationship with rising nutrient concentration (0.5-5.0 g l-1 of the R2A medium), peaking at 3.0 g l-1. Conversely, species richness and diversity exhibited unimodal patterns, with peaks at 1.0 g l-1. Dominant phylotypes (Stenotrophomonas, Acinetobacter, Pseudomonas, and Enterobacter) increased in abundance with increasing nutrient availability, whereas rare phylotypes (e.g. Massilia) declined. Community analyses revealed significant shifts in bacterial community structure with increasing nutrient availability, particularly pronounced between 0.5 and 1.0 g l-1. Spatial heterogeneity in both abundance and community composition decreased markedly from 0.5 to 1.0 g l-1, then showed a slight increase at higher nutrient concentrations. Additionally, lower-ranked individual phylotypes exhibited greater spatial heterogeneity at concentrations ≥1.0 g l-1. Finally, network size and complexity displayed a unimodal pattern with nutrient availability, peaking at 1.0 g l-1.</p><p><strong>Conclusion: </strong>Nutrient availability is a pivotal ecological factor shaping microbial dispersal, community assembly, and interspecies interactions within biofilm metacommunities.</p>\",\"PeriodicalId\":15036,\"journal\":{\"name\":\"Journal of Applied Microbiology\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":3.2000,\"publicationDate\":\"2025-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Applied Microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1093/jambio/lxaf209\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Applied Microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1093/jambio/lxaf209","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
目的:养分有效性可以影响微生物在当地栖息地的扩散。本研究探讨了不同营养浓度对生物膜元群落聚集的影响。方法与结果:在实验板内有规律排列的玻璃微珠上进行细菌多菌培养,形成生物膜。采用定量PCR和高通量测序对生物膜群落进行分析。细菌丰度随着营养物浓度(R2A培养基的0.5 ~ 5.0 g -1)的增加呈幂律关系增加,在3.0 g -1时达到峰值。相反,物种丰富度和多样性呈单峰模式,峰值在1.0 g -1。优势种型(窄养单胞菌、不动杆菌、假单胞菌和肠杆菌)的丰度随着养分利用率的增加而增加,而罕见种型(如马氏菌)则下降。群落分析显示,随着养分有效性的增加,细菌群落结构发生了显著的变化,特别是在0.5和1.0 g -1之间。丰度和群落组成的空间异质性在0.5 ~ 1.0 g -1范围内显著降低,在较高的养分浓度下略有增加。此外,在浓度≥1.0 g -1时,排名较低的个体种型表现出更大的空间异质性。最后,网络规模和复杂性与养分有效性呈单峰模式,在1.0 g -1时达到峰值。结论:养分有效性是影响生物膜元群落中微生物扩散、群落聚集和种间相互作用的关键生态因子。
Dispersal limitation of rare species by increasing nutrient availability leads to the spatial community uniformity among biofilms.
Aim: Nutrient availability can influence microbial dispersal across local habitats. This study investigated how varying nutrient concentrations affect biofilm metacommunity assembly.
Methods and results: Biofilms were developed from a bacterial polyculture on glass beads regularly arranged within experimental plates. Biofilm communities were analyzed using quantitative PCR and high-throughput sequencing. Bacterial abundance increased, following a positive power-law relationship with rising nutrient concentration (0.5-5.0 g l-1 of the R2A medium), peaking at 3.0 g l-1. Conversely, species richness and diversity exhibited unimodal patterns, with peaks at 1.0 g l-1. Dominant phylotypes (Stenotrophomonas, Acinetobacter, Pseudomonas, and Enterobacter) increased in abundance with increasing nutrient availability, whereas rare phylotypes (e.g. Massilia) declined. Community analyses revealed significant shifts in bacterial community structure with increasing nutrient availability, particularly pronounced between 0.5 and 1.0 g l-1. Spatial heterogeneity in both abundance and community composition decreased markedly from 0.5 to 1.0 g l-1, then showed a slight increase at higher nutrient concentrations. Additionally, lower-ranked individual phylotypes exhibited greater spatial heterogeneity at concentrations ≥1.0 g l-1. Finally, network size and complexity displayed a unimodal pattern with nutrient availability, peaking at 1.0 g l-1.
Conclusion: Nutrient availability is a pivotal ecological factor shaping microbial dispersal, community assembly, and interspecies interactions within biofilm metacommunities.
期刊介绍:
Journal of & Letters in Applied Microbiology are two of the flagship research journals of the Society for Applied Microbiology (SfAM). For more than 75 years they have been publishing top quality research and reviews in the broad field of applied microbiology. The journals are provided to all SfAM members as well as having a global online readership totalling more than 500,000 downloads per year in more than 200 countries. Submitting authors can expect fast decision and publication times, averaging 33 days to first decision and 34 days from acceptance to online publication. There are no page charges.