多种癌症类型中ITIH家族的综合分析及胃癌中ITIH1的初步研究

IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Qiangqiang Zhong, Baokang Zhao, Xiao She, Xiangjie Liu
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引用次数: 0

摘要

ith家族对细胞外基质稳定性和癌症进展至关重要,但在多组学和免疫微环境中尚未得到充分研究;本研究分析了它们在不同癌症中的作用以及ITIH1在胃癌中的功能,以揭示其诊断、预后和治疗潜力。方法:我们使用TCGA、GTEx、GEO、CPTAC和IMvigor210数据集分析了33种癌症类型和24种非癌性疾病的RNA-seq、蛋白表达和临床数据。方法包括差异表达分析、诊断潜力的ROC曲线评估、预后价值的Cox回归和Kaplan-Meier生存分析、途径富集的GSEA和ih1靶向小分子筛选的分子对接。评估免疫微环境相互作用、肿瘤突变负担(TMB)、微卫星不稳定性(MSI)和免疫治疗反应。体外实验通过qRT-PCR、Western blotting、siRNA敲低和功能检测验证了ITIH1在胃癌中的作用。结果:ITIH家族基因在癌症和非癌性疾病中表现出差异表达,其中ITIH1、ITIH4和ITIH5显示出很高的诊断潜力(多种癌症的AUC为0.90)。ITIH1是胃癌患者生存不良的危险因素(p < 0.05)。接受免疫检查点抑制剂治疗的患者,ITIH评分较低与生存率提高相关(p < 0.05)。ITIH基因与免疫检查点(PD-1、CTLA-4)、TMB和MSI有很强的相关性。分子对接发现包括Entinostat在内的6个小分子对ITIH1具有高结合亲和力(-8.4 kcal/mol)。在胃癌细胞株(HGC-27、AGS)中,ITIH1敲低可显著降低增殖、迁移和侵袭(p < 0.01)。讨论:本研究强调了ITIH家族在各种癌症和非癌性疾病中作为诊断和预后生物标志物的关键作用,ITIH1在胃癌中的治疗潜力通过其对肿瘤进展的影响而得到强调,尽管局限性包括一些ITIH基因在体外和体内的表达差异,需要进一步验证。结论:我们的研究结果强调了ITIH家族作为诊断生物标志物、预后指标和治疗靶点的潜力,特别是在胃癌中。ITIH1抑制剂的鉴定及其与免疫检查点、TMB和MSI的关联为改进诊断、靶向治疗和免疫治疗预测铺平了道路,提高了各种疾病患者的预后。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A Comprehensive Analysis of the ITIH Family Across Multiple Cancer Types and an Initial Investigation of ITIH1 in Gastric Cancer.

Introduction: The ITIH family, crucial for extracellular matrix stability and cancer progression, is underexplored in multi-omic profiles and immune microenvironments; this study analyzes their roles across cancers and ITIH1's function in gastric cancer to reveal diagnostic, prognostic, and therapeutic potential.

Methods: We analyzed RNA-seq, protein expr ession, and clinical data from 33 cancer types and 24 non-cancerous conditions using TCGA, GTEx, GEO, CPTAC, and IMvigor210 datasets. Methods included differential expression analysis, ROC curve assessment for diagnostic potential, Cox regression and Kaplan-Meier survival analyses for prognostic value, GSEA for pathway enrichment, and molecular docking for ITIH1-targeted small molecule screening. Immune microenvironment interactions, tumor mutational burden (TMB), microsatellite instability (MSI), and immunotherapy response were evaluated. in vitro experiments validated ITIH1's role in gastric cancer using qRT-PCR, Western blotting, siRNA knockdown, and functional assays.

Results: ITIH family genes exhibited differential expression across cancers and non-- cancerous conditions, with ITIH1, ITIH4, and ITIH5 showing high diagnostic potential (AUC > 0.90 in multiple cancers). ITIH1 was a risk factor for poor survival in gastric cancer (p < 0.05). Lower ITIH scores correlated with improved survival in patients receiving immune checkpoint inhibitors (p < 0.05). ITIH genes showed strong correlations with immune checkpoints (PD-1, CTLA-4), TMB, and MSI. Molecular docking identified six small molecules, including Entinostat, with high binding affinity for ITIH1 (-8.4 kcal/mol). ITIH1 knockdown in gastric cancer cell lines (HGC-27, AGS) significantly reduced proliferation, migration, and invasion (p < 0.01).

Discussion: This study underscores the ITIH family's critical role as diagnostic and prognostic biomarkers across various cancers and non-cancerous conditions, with ITIH1's therapeutic potential in gastric cancer highlighted through its impact on tumor progression, though limitations include discrepancies in some ITIH gene expressions between in vitro and in vivo settings, necessitating further validation.

Conclusion: Our findings highlight the ITIH family's potential as diagnostic biomarkers, prognostic indicators, and therapeutic targets, particularly in gastric cancer. The identification of ITIH1 inhibitors and their association with immune checkpoints, TMB, and MSI paves the way for improved diagnostics, targeted therapies, and immunotherapy predictions, enhancing patient outcomes across diseases.

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来源期刊
Current medicinal chemistry
Current medicinal chemistry 医学-生化与分子生物学
CiteScore
8.60
自引率
2.40%
发文量
468
审稿时长
3 months
期刊介绍: Aims & Scope Current Medicinal Chemistry covers all the latest and outstanding developments in medicinal chemistry and rational drug design. Each issue contains a series of timely in-depth reviews and guest edited thematic issues written by leaders in the field covering a range of the current topics in medicinal chemistry. The journal also publishes reviews on recent patents. Current Medicinal Chemistry is an essential journal for every medicinal chemist who wishes to be kept informed and up-to-date with the latest and most important developments.
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