用人工智能方法系统揭示植物定量多靶点综合效应。

IF 10.5 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Jiang Qi-Yu, Ren Tian-Ai, Fan Xin-Yu, Zeng Hui-Yan
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引用次数: 0

摘要

许多植物具有多种化学成分和多种靶点,它们对疾病的潜在作用是多种靶点的综合作用。如何系统地揭示植物对病害的综合多靶点效应既是一个挑战,也是一个创新。本研究开发了一种新的基于人工智能的研究方法,并以山楂为例;采用深度自编码神经网络模型,将山楂与动脉粥样硬化之间多个共同靶点在动脉粥样硬化血管周围脂肪组织(PVAT)单细胞转录组各细胞中的表达水平编码为综合值(MTIS)。基于这一创新方法,将在单细胞水平上实现植物对疾病多靶点潜在综合效应的景观和定量制图,并通过MTIS比较、MTIS-伪时差分析、细胞通讯分析、免疫浸润分析等深入分析,揭示山楂对动脉粥样硬化PVAT微环境的潜在机制和景观。由于许多病害植物具有多种化学成分和多个靶点,因此本研究提出的新方法可能具有广泛的应用前景。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Systematically Revealing Quantitative Multi-Target Integrative Effects of Plants With Artificial Intelligence Method.

Many plants have multiple chemical components and multiple targets, and their potential effects on diseases are the integrative effects of multiple targets. How to systematically reveal the integrated multi-targets effect of plants on diseases is not only a challenge, but also an innovation. This study developed a novel research method based on artificial intelligence and took hawthorn as an example; a deep auto-encoding neural network model was used to encode the expression levels of multiple common targets between hawthorn and atherosclerosis in each cell of the single-cell transcriptome of atherosclerotic perivascular adipose tissue (PVAT) as an integrated value (MTIS). The landscape and quantitative mapping of multi-targets potential integrated effect of plants on disease at the single-cell level would be achieved based on this innovative approach, and in-depth analysis such as MTIS comparisons, MTIS-pseudotime difference analysis, cell communication analysis, and immune infiltration analysis, was performed to reveal the potential mechanism and landscapes of hawthorn on the PVAT microenvironment of atherosclerotic. Due to many plants for disease having multiple chemical compositions and multiple targets, the novel method proposed in this study may have a wide range of applications.

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来源期刊
Plant Biotechnology Journal
Plant Biotechnology Journal 生物-生物工程与应用微生物
CiteScore
20.50
自引率
2.90%
发文量
201
审稿时长
1 months
期刊介绍: Plant Biotechnology Journal aspires to publish original research and insightful reviews of high impact, authored by prominent researchers in applied plant science. The journal places a special emphasis on molecular plant sciences and their practical applications through plant biotechnology. Our goal is to establish a platform for showcasing significant advances in the field, encompassing curiosity-driven studies with potential applications, strategic research in plant biotechnology, scientific analysis of crucial issues for the beneficial utilization of plant sciences, and assessments of the performance of plant biotechnology products in practical applications.
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