用多位点序列分型评价伊朗西部地区高致病性肺炎克雷伯菌分离株

IF 4.6 3区 生物学 Q2 MICROBIOLOGY
Mohammad Hossein Haddadi, Nourkhoda Sadeghifard, Saeed Khoshnood, Abbas Maleki, Sobhan Ghafourian, Hassan Valadbeigi
{"title":"用多位点序列分型评价伊朗西部地区高致病性肺炎克雷伯菌分离株","authors":"Mohammad Hossein Haddadi,&nbsp;Nourkhoda Sadeghifard,&nbsp;Saeed Khoshnood,&nbsp;Abbas Maleki,&nbsp;Sobhan Ghafourian,&nbsp;Hassan Valadbeigi","doi":"10.1002/mbo3.70049","DOIUrl":null,"url":null,"abstract":"<div>\n \n \n <section>\n \n <h3> Background</h3>\n \n <p>Hypervirulent <i>Klebsiella pneumonia</i> (hvKP) has been considered due to severe infections such as pyogenic liver abscess, pneumonia, meningitis, endophthalmitis and necrotizing fasciitis. Due to the importance of the subject, hv<i>KP</i> isolates were investigated in the current study.</p>\n </section>\n \n <section>\n \n <h3> Methods</h3>\n \n <p>A total of 52 non-repetitive <i>Klebsiella pneumonia (K. pneumonia</i>) isolates were collected from clinical specimens (pleural fluid, blood, urine and trachal aspiration) of hospitalized patients in three well-known hospitals in Ilam, west of Iran. Phenotypic tests, including the string test and potassium tellurite resistance, and molecular methods such as polymerase chain reaction (PCR) for <i>iucA</i>, <i>iroB</i>, <i>iutA</i>, and <i>rmpA</i> genes were used for hvKP diagnosis. In addition, multilocus sequence typing (MLST) was used to clarify the genetic relationships between isolates.</p>\n </section>\n \n <section>\n \n <h3> Results</h3>\n \n <p>The <i>mrkD</i>, <i>iroB</i>, <i>iucA</i>, <i>iutA</i>, and <i>rmpA</i> genes were present in 6 (11.53%), 4 (7.7%), 12 (23.1%), 5 (9.6%), and 8 (15.4%) of the <i>K. pneumoniae</i> isolates, respectively. Eight isolates from different sources were identified with new sequence types (STs). These newly identified STs include ST-7466, ST-7467, ST-7468, ST-7469, ST-7470, ST-7471, ST-7472 and ST-7473.</p>\n </section>\n \n <section>\n \n <h3> Conclusions</h3>\n \n <p>We reported the eight new STs based on the MLST method for the phylogenetics of hvKP isolates. Our data indicated that no correlation between the phylogenetics of hvKP isolates. So, more extensive studies are needed to better understand the epidemiology of hvKP.</p>\n </section>\n </div>","PeriodicalId":18573,"journal":{"name":"MicrobiologyOpen","volume":"14 4","pages":""},"PeriodicalIF":4.6000,"publicationDate":"2025-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mbo3.70049","citationCount":"0","resultStr":"{\"title\":\"Assessment of Hypervirulent Klebsiella pneumoniae Isolates Using Multilocus Sequence Typing in West of Iran\",\"authors\":\"Mohammad Hossein Haddadi,&nbsp;Nourkhoda Sadeghifard,&nbsp;Saeed Khoshnood,&nbsp;Abbas Maleki,&nbsp;Sobhan Ghafourian,&nbsp;Hassan Valadbeigi\",\"doi\":\"10.1002/mbo3.70049\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div>\\n \\n \\n <section>\\n \\n <h3> Background</h3>\\n \\n <p>Hypervirulent <i>Klebsiella pneumonia</i> (hvKP) has been considered due to severe infections such as pyogenic liver abscess, pneumonia, meningitis, endophthalmitis and necrotizing fasciitis. Due to the importance of the subject, hv<i>KP</i> isolates were investigated in the current study.</p>\\n </section>\\n \\n <section>\\n \\n <h3> Methods</h3>\\n \\n <p>A total of 52 non-repetitive <i>Klebsiella pneumonia (K. pneumonia</i>) isolates were collected from clinical specimens (pleural fluid, blood, urine and trachal aspiration) of hospitalized patients in three well-known hospitals in Ilam, west of Iran. Phenotypic tests, including the string test and potassium tellurite resistance, and molecular methods such as polymerase chain reaction (PCR) for <i>iucA</i>, <i>iroB</i>, <i>iutA</i>, and <i>rmpA</i> genes were used for hvKP diagnosis. In addition, multilocus sequence typing (MLST) was used to clarify the genetic relationships between isolates.</p>\\n </section>\\n \\n <section>\\n \\n <h3> Results</h3>\\n \\n <p>The <i>mrkD</i>, <i>iroB</i>, <i>iucA</i>, <i>iutA</i>, and <i>rmpA</i> genes were present in 6 (11.53%), 4 (7.7%), 12 (23.1%), 5 (9.6%), and 8 (15.4%) of the <i>K. pneumoniae</i> isolates, respectively. Eight isolates from different sources were identified with new sequence types (STs). These newly identified STs include ST-7466, ST-7467, ST-7468, ST-7469, ST-7470, ST-7471, ST-7472 and ST-7473.</p>\\n </section>\\n \\n <section>\\n \\n <h3> Conclusions</h3>\\n \\n <p>We reported the eight new STs based on the MLST method for the phylogenetics of hvKP isolates. Our data indicated that no correlation between the phylogenetics of hvKP isolates. So, more extensive studies are needed to better understand the epidemiology of hvKP.</p>\\n </section>\\n </div>\",\"PeriodicalId\":18573,\"journal\":{\"name\":\"MicrobiologyOpen\",\"volume\":\"14 4\",\"pages\":\"\"},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2025-08-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mbo3.70049\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"MicrobiologyOpen\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/mbo3.70049\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"MicrobiologyOpen","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/mbo3.70049","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

高致病性肺炎克雷伯氏菌(hvKP)被认为是由于严重感染,如化脓性肝脓肿、肺炎、脑膜炎、眼内炎和坏死性筋膜炎。由于该课题的重要性,本研究对hvKP分离株进行了调查。方法从伊朗西部伊拉姆市3家知名医院住院患者的临床标本(胸膜液、血液、尿液和气管抽吸)中分离出52株非重复性肺炎克雷伯菌(肺炎克雷伯菌)。hvKP的诊断采用表型试验,包括串试验和抗碲酸钾试验,以及iucA、iroB、iutA和rmpA基因的聚合酶链反应(PCR)等分子方法。此外,还利用多位点序列分型(MLST)明确了分离株间的遗传关系。结果mrkD、iroB、iucA、iutA和rmpA基因分别在6株(11.53%)、4株(7.7%)、12株(23.1%)、5株(9.6%)和8株(15.4%)中存在。从不同来源分离出8株具有新的序列类型(STs)。这些新鉴定的st包括ST-7466, ST-7467, ST-7468, ST-7469, ST-7470, ST-7471, ST-7472和ST-7473。结论利用MLST方法对hvKP分离株进行系统发育分析,获得8个新的STs。我们的数据表明hvKP分离株的系统发育没有相关性。因此,需要更广泛的研究来更好地了解hvKP的流行病学。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Assessment of Hypervirulent Klebsiella pneumoniae Isolates Using Multilocus Sequence Typing in West of Iran

Assessment of Hypervirulent Klebsiella pneumoniae Isolates Using Multilocus Sequence Typing in West of Iran

Background

Hypervirulent Klebsiella pneumonia (hvKP) has been considered due to severe infections such as pyogenic liver abscess, pneumonia, meningitis, endophthalmitis and necrotizing fasciitis. Due to the importance of the subject, hvKP isolates were investigated in the current study.

Methods

A total of 52 non-repetitive Klebsiella pneumonia (K. pneumonia) isolates were collected from clinical specimens (pleural fluid, blood, urine and trachal aspiration) of hospitalized patients in three well-known hospitals in Ilam, west of Iran. Phenotypic tests, including the string test and potassium tellurite resistance, and molecular methods such as polymerase chain reaction (PCR) for iucA, iroB, iutA, and rmpA genes were used for hvKP diagnosis. In addition, multilocus sequence typing (MLST) was used to clarify the genetic relationships between isolates.

Results

The mrkD, iroB, iucA, iutA, and rmpA genes were present in 6 (11.53%), 4 (7.7%), 12 (23.1%), 5 (9.6%), and 8 (15.4%) of the K. pneumoniae isolates, respectively. Eight isolates from different sources were identified with new sequence types (STs). These newly identified STs include ST-7466, ST-7467, ST-7468, ST-7469, ST-7470, ST-7471, ST-7472 and ST-7473.

Conclusions

We reported the eight new STs based on the MLST method for the phylogenetics of hvKP isolates. Our data indicated that no correlation between the phylogenetics of hvKP isolates. So, more extensive studies are needed to better understand the epidemiology of hvKP.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
MicrobiologyOpen
MicrobiologyOpen MICROBIOLOGY-
CiteScore
8.00
自引率
0.00%
发文量
78
审稿时长
20 weeks
期刊介绍: MicrobiologyOpen is a peer reviewed, fully open access, broad-scope, and interdisciplinary journal delivering rapid decisions and fast publication of microbial science, a field which is undergoing a profound and exciting evolution in this post-genomic era. The journal aims to serve the research community by providing a vehicle for authors wishing to publish quality research in both fundamental and applied microbiology. Our goal is to publish articles that stimulate discussion and debate, as well as add to our knowledge base and further the understanding of microbial interactions and microbial processes. MicrobiologyOpen gives prompt and equal consideration to articles reporting theoretical, experimental, applied, and descriptive work in all aspects of bacteriology, virology, mycology and protistology, including, but not limited to: - agriculture - antimicrobial resistance - astrobiology - biochemistry - biotechnology - cell and molecular biology - clinical microbiology - computational, systems, and synthetic microbiology - environmental science - evolutionary biology, ecology, and systematics - food science and technology - genetics and genomics - geobiology and earth science - host-microbe interactions - infectious diseases - natural products discovery - pharmaceutical and medicinal chemistry - physiology - plant pathology - veterinary microbiology We will consider submissions across unicellular and cell-cluster organisms: prokaryotes (bacteria, archaea) and eukaryotes (fungi, protists, microalgae, lichens), as well as viruses and prions infecting or interacting with microorganisms, plants and animals, including genetic, biochemical, biophysical, bioinformatic and structural analyses. The journal features Original Articles (including full Research articles, Method articles, and Short Communications), Commentaries, Reviews, and Editorials. Original papers must report well-conducted research with conclusions supported by the data presented in the article. We also support confirmatory research and aim to work with authors to meet reviewer expectations. MicrobiologyOpen publishes articles submitted directly to the journal and those referred from other Wiley journals.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信