抗癫痫药物设计的综合理论研究:DFT、TD-DFT和分子对接方法。

Muhammad Nadeem Akhtar, Saira Khan, Farhan Siddique, Mehvish Bibi, Seema Zareen, Arooma Yasmin, Syda Saba Hassan
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引用次数: 0

摘要

背景:癫痫是一种慢性神经系统疾病,影响全球约5000万人。为了治疗这种疾病,已经通过计算方法研究了不同的抗癫痫药物。方法:采用密度泛函理论(DFT)和时间依赖密度泛函理论(TDDFT)研究抗癫痫药物(EP1-EP5)的光电、光动力学和结构特性。采用B3LYP/6-311 G (d, p)进行计算模拟研究。进一步与参比药物苯巴比妥(R)和(EP1-EP5)药物进行比较,研究了前沿分子轨道(FMOs)、激发能、空穴-电子重叠、态密度、结合能、分子静电势、过渡密度矩阵和态密度等几何变量。结果:与抗癫痫药物R相比,AEDs (EP1-EP5)的吸收光谱发生了色移,激发能较低,结合能相近。结果表明,抗癫痫药物具有较低的HOMO-LUMO能隙(Eg = 1.89 ~ 1.98 eV),表明它们具有较高的HOMO-LUMO的电荷定向行为。EP5分子表现出优异的HOMO (-7.17 eV)、LUMO (-2.80 eV)、最低能带隙(4.37 eV)和增强的DOS结果,增强了药物-蛋白相互作用。结论:EP5在受体区存在吸电子基团,扩展了偶联性,更好的电荷转移可能是其最佳的药物效率。在分子对接过程中,EP5与抗癫痫蛋白(4EY7和7SK2)的强大相互作用在设计的药物中显示出良好的结构模板。其中,EP5作为抗癫痫药物具有较好的结构特性,有待于未来的药物发现。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A Comprehensive Theoretical Study of Anti-Epileptic Drug Design: DFT, TD-DFT, and Molecular Docking Approach.

Background: Epilepsy is a chronic neurological disease that affects around 50 million people globally. To cure this disorder, different antiepileptic drugs have been studied via computational approaches.

Methods: Density functional theory (DFT) and time-dependent-density functional theory (TDDFT) are employed to investigate the optoelectronic, photodynamic, and structural properties of antiepileptic drugs (EP1-EP5). The B3LYP/6-311 G (d, p) was used for the computational simulations study. Further comparisons with reference drug phenobarbital (R) and (EP1-EP5) drugs, several geometrical variables, including frontier molecular orbitals (FMOs), excitation energy, hole-electron overlap, density of states, binding energy, molecular electrostatic potential, transition density matrix, and density of states were performed.

Results: Compared to R with antiepileptic drugs AEDs (EP1-EP5) exhibited a bathochromic shift of the absorption spectrum, lower excitation energies, and comparable binding energies. The findings showed that the antiepileptic drugs had significantly lower HOMO-LUMO energy gaps (Eg = 1.89-1.98 eV), pointing to their higher charge-directing behavior from HOMO to LUMO. The EP5 molecule exhibited excellent HOMO (-7.17 eV), LUMO (-2.80 eV), lowest energy band gap (4.37 eV), and boosted DOS results, which strengthens the drug-protein interaction.

Conclusion: EP5 exhibited the enhanced performance due to the presence of the electron withdrawing group in the acceptor region, extended conjugation, and better charge transference could be the best drug efficiency. During molecular docking, the robust interactions in EP5 with the antiepileptic proteins (4EY7 and 7SK2) showed an excellent structural template among the designed drugs. Among them, EP5 has better structural properties as an antiepileptic drug for future drug discovery.

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