山参叶绿体全基因组的研究。(豆科),一种极度濒危的菲律宾宿务特有植物。

IF 0.7 4区 生物学 Q4 GENETICS & HEREDITY
Mitochondrial DNA. Part B, Resources Pub Date : 2025-08-11 eCollection Date: 2025-01-01 DOI:10.1080/23802359.2025.2544681
Jeremaiah L Estrada, Claudette I Canonigo, Kristine Joyce O Quiñones, Renerio P Gentallan
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引用次数: 0

摘要

水仙花(cyometra cebuensis)它是菲律宾宿务特有的一种极度濒危物种,缺乏已发表的基因组数据。我们提出了第一个完整的叶绿体基因组,使用Illumina配对端测序组装。158,474 bp的基因组包括一个大单拷贝(86,821 bp)、一个小单拷贝(19,329 bp)和两个反向重复(26,162 bp), GC含量为36.4%。它包含125个基因:80个蛋白质编码基因,37个tRNA和8个rRNA。系统发育分析表明,C. cebuensis属于Detarioideae的单系类群,与C. lenticellata关系密切,为其鉴定、系统发育和保存提供了必要的数据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

The complete chloroplast genome of <i>Cynometra cebuensis</i> F. Seid. (Fabaceae), a critically endangered endemic plant from Cebu, Philippines.

The complete chloroplast genome of <i>Cynometra cebuensis</i> F. Seid. (Fabaceae), a critically endangered endemic plant from Cebu, Philippines.

The complete chloroplast genome of <i>Cynometra cebuensis</i> F. Seid. (Fabaceae), a critically endangered endemic plant from Cebu, Philippines.

The complete chloroplast genome of Cynometra cebuensis F. Seid. (Fabaceae), a critically endangered endemic plant from Cebu, Philippines.

Cynometra cebuensis F. Seid., a critically endangered species endemic to Cebu, Philippines, lacks published genomic data. We present its first complete chloroplast genome, assembled using Illumina paired-end sequencing. The 158,474 bp genome includes a large single-copy (86,821 bp), small single-copy (19,329 bp), and two inverted repeats (26,162 bp each), with a GC content of 36.4%. It contains 125 genes: 80 protein-coding, 37 tRNA, and eight rRNA. Phylogenetic analysis places C. cebuensis in a monophyletic group within Detarioideae, closely related to C. lenticellata, providing essential data for its identification, phylogeny, and conservation.

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来源期刊
Mitochondrial DNA. Part B, Resources
Mitochondrial DNA. Part B, Resources Biochemistry, Genetics and Molecular Biology-Molecular Biology
CiteScore
1.30
自引率
20.00%
发文量
670
期刊介绍: This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.
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