通过网络药理学和实验验证探讨五灵散治疗糖尿病肾病的潜在靶点。

IF 3.9 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Frontiers in Molecular Biosciences Pub Date : 2025-07-29 eCollection Date: 2025-01-01 DOI:10.3389/fmolb.2025.1647796
Xicheng Hu, Zhen Wang, Liyan Zhang
{"title":"通过网络药理学和实验验证探讨五灵散治疗糖尿病肾病的潜在靶点。","authors":"Xicheng Hu, Zhen Wang, Liyan Zhang","doi":"10.3389/fmolb.2025.1647796","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Diabetic Nephropathy (DN), a major microvascular complication of diabetes, poses challenges for current treatments to effectively delay its progression. Wulingsan (WLS), a traditional Chinese medicine formula, possesses potential for regulating water-fluid metabolism, and exhibits anti-inflammatory and antioxidant properties, yet its multi-target mechanism in treating DN remains unclear. This study aims to systematically elucidate the molecular mechanisms of WLS in the treatment of DN through network pharmacology, molecular docking, and <i>in vitro</i> experiments.</p><p><strong>Methods: </strong>Active ingredients of WLS and their targets were screened using the TCMSP database, while DN-related targets were obtained from the GeneCards and OMIM databases to construct an \"ingredient-target-disease\" network. GO and KEGG pathway enrichment analyses were performed using DAVID to identify key biological processes and signaling pathways. A protein-protein interaction (PPI) network was constructed via the STRING database, and key targets were screened using the CytoHubba plugin. Subsequently, molecular docking and molecular dynamics simulations were conducted to validate the binding affinity and stability of active ingredients with key targets. <i>In vitro</i>, a high glucose-induced HK-2 cell model was employed, and the effects of WLS on cell viability and cell cycle were assessed using CCK-8 assays and flow cytometry, respectively.</p><p><strong>Results: </strong>The study screened and identified SRC, AKT1, TNF, ESR1, and HSP90AA1 as key targets for the treatment of DN. KEGG enrichment analysis revealed that WLS primarily regulates signaling pathways such as PI3K-Akt and MAPK, which are closely associated with inflammation, oxidative stress, and fibrosis. Molecular docking indicated that active ingredients (β-caryophyllene, alisol C) exhibited binding energies below -5.0 kcal/mol with key targets (TNF, HSP90AA1), and molecular dynamics simulations further validated their binding stability. <i>In vitro</i> experiments demonstrated that WLS significantly inhibited the proliferation of high glucose-induced HK-2 cells (P < 0.01) and induced G2/M phase cell cycle arrest (P < 0.01).</p><p><strong>Conclusion: </strong>Wulingsan alleviates the progression of Diabetic Nephropathy by its multiple active ingredients acting synergistically on key targets such as SRC, AKT1, and TNF, thereby regulating PI3K-Akt and MAPK signaling pathways to inhibit inflammation, oxidative stress, and fibrosis. This research provides a theoretical basis for the clinical application of WLS, and its therapeutic efficacy warrants further verification through future <i>in vivo</i> experiments.</p>","PeriodicalId":12465,"journal":{"name":"Frontiers in Molecular Biosciences","volume":"12 ","pages":"1647796"},"PeriodicalIF":3.9000,"publicationDate":"2025-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12339558/pdf/","citationCount":"0","resultStr":"{\"title\":\"Investigating potential targets of Wulingsan in diabetic nephropathy through network pharmacology and experimental validation.\",\"authors\":\"Xicheng Hu, Zhen Wang, Liyan Zhang\",\"doi\":\"10.3389/fmolb.2025.1647796\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>Diabetic Nephropathy (DN), a major microvascular complication of diabetes, poses challenges for current treatments to effectively delay its progression. Wulingsan (WLS), a traditional Chinese medicine formula, possesses potential for regulating water-fluid metabolism, and exhibits anti-inflammatory and antioxidant properties, yet its multi-target mechanism in treating DN remains unclear. This study aims to systematically elucidate the molecular mechanisms of WLS in the treatment of DN through network pharmacology, molecular docking, and <i>in vitro</i> experiments.</p><p><strong>Methods: </strong>Active ingredients of WLS and their targets were screened using the TCMSP database, while DN-related targets were obtained from the GeneCards and OMIM databases to construct an \\\"ingredient-target-disease\\\" network. GO and KEGG pathway enrichment analyses were performed using DAVID to identify key biological processes and signaling pathways. A protein-protein interaction (PPI) network was constructed via the STRING database, and key targets were screened using the CytoHubba plugin. Subsequently, molecular docking and molecular dynamics simulations were conducted to validate the binding affinity and stability of active ingredients with key targets. <i>In vitro</i>, a high glucose-induced HK-2 cell model was employed, and the effects of WLS on cell viability and cell cycle were assessed using CCK-8 assays and flow cytometry, respectively.</p><p><strong>Results: </strong>The study screened and identified SRC, AKT1, TNF, ESR1, and HSP90AA1 as key targets for the treatment of DN. KEGG enrichment analysis revealed that WLS primarily regulates signaling pathways such as PI3K-Akt and MAPK, which are closely associated with inflammation, oxidative stress, and fibrosis. Molecular docking indicated that active ingredients (β-caryophyllene, alisol C) exhibited binding energies below -5.0 kcal/mol with key targets (TNF, HSP90AA1), and molecular dynamics simulations further validated their binding stability. <i>In vitro</i> experiments demonstrated that WLS significantly inhibited the proliferation of high glucose-induced HK-2 cells (P < 0.01) and induced G2/M phase cell cycle arrest (P < 0.01).</p><p><strong>Conclusion: </strong>Wulingsan alleviates the progression of Diabetic Nephropathy by its multiple active ingredients acting synergistically on key targets such as SRC, AKT1, and TNF, thereby regulating PI3K-Akt and MAPK signaling pathways to inhibit inflammation, oxidative stress, and fibrosis. This research provides a theoretical basis for the clinical application of WLS, and its therapeutic efficacy warrants further verification through future <i>in vivo</i> experiments.</p>\",\"PeriodicalId\":12465,\"journal\":{\"name\":\"Frontiers in Molecular Biosciences\",\"volume\":\"12 \",\"pages\":\"1647796\"},\"PeriodicalIF\":3.9000,\"publicationDate\":\"2025-07-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12339558/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Frontiers in Molecular Biosciences\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.3389/fmolb.2025.1647796\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in Molecular Biosciences","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3389/fmolb.2025.1647796","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

背景:糖尿病肾病(Diabetic Nephropathy, DN)是糖尿病的主要微血管并发症,目前的治疗方法对有效延缓其进展提出了挑战。五灵散是一种具有调节水液代谢、抗炎、抗氧化作用的中药复方,但其治疗DN的多靶点机制尚不清楚。本研究旨在通过网络药理学、分子对接、体外实验等手段,系统阐明WLS治疗DN的分子机制。方法:利用TCMSP数据库筛选WLS的有效成分及其靶点,从GeneCards和OMIM数据库获取dn相关靶点,构建“成分-靶点-疾病”网络。使用DAVID进行GO和KEGG通路富集分析,以确定关键的生物过程和信号通路。通过STRING数据库构建蛋白-蛋白相互作用(PPI)网络,使用CytoHubba插件筛选关键靶点。随后进行分子对接和分子动力学模拟,验证活性成分与关键靶点的结合亲和力和稳定性。体外建立高糖诱导的HK-2细胞模型,分别采用CCK-8和流式细胞术检测WLS对细胞活力和细胞周期的影响。结果:本研究筛选并鉴定出SRC、AKT1、TNF、ESR1和HSP90AA1作为治疗DN的关键靶点。KEGG富集分析显示,WLS主要调控与炎症、氧化应激和纤维化密切相关的PI3K-Akt和MAPK等信号通路。分子对接表明,活性成分(β-石蜡烯、香芹醇C)与关键靶点(TNF、HSP90AA1)的结合能均低于-5.0 kcal/mol,分子动力学模拟进一步验证了其结合稳定性。体外实验表明,WLS显著抑制高糖诱导的HK-2细胞增殖(P < 0.01),诱导G2/M期细胞周期阻滞(P < 0.01)。结论:武陵散可通过多种有效成分协同作用于SRC、AKT1、TNF等关键靶点,从而调节PI3K-Akt、MAPK信号通路,抑制炎症、氧化应激、纤维化,从而缓解糖尿病肾病的进展。本研究为WLS的临床应用提供了理论基础,其治疗效果有待于未来的体内实验进一步验证。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Investigating potential targets of Wulingsan in diabetic nephropathy through network pharmacology and experimental validation.

Background: Diabetic Nephropathy (DN), a major microvascular complication of diabetes, poses challenges for current treatments to effectively delay its progression. Wulingsan (WLS), a traditional Chinese medicine formula, possesses potential for regulating water-fluid metabolism, and exhibits anti-inflammatory and antioxidant properties, yet its multi-target mechanism in treating DN remains unclear. This study aims to systematically elucidate the molecular mechanisms of WLS in the treatment of DN through network pharmacology, molecular docking, and in vitro experiments.

Methods: Active ingredients of WLS and their targets were screened using the TCMSP database, while DN-related targets were obtained from the GeneCards and OMIM databases to construct an "ingredient-target-disease" network. GO and KEGG pathway enrichment analyses were performed using DAVID to identify key biological processes and signaling pathways. A protein-protein interaction (PPI) network was constructed via the STRING database, and key targets were screened using the CytoHubba plugin. Subsequently, molecular docking and molecular dynamics simulations were conducted to validate the binding affinity and stability of active ingredients with key targets. In vitro, a high glucose-induced HK-2 cell model was employed, and the effects of WLS on cell viability and cell cycle were assessed using CCK-8 assays and flow cytometry, respectively.

Results: The study screened and identified SRC, AKT1, TNF, ESR1, and HSP90AA1 as key targets for the treatment of DN. KEGG enrichment analysis revealed that WLS primarily regulates signaling pathways such as PI3K-Akt and MAPK, which are closely associated with inflammation, oxidative stress, and fibrosis. Molecular docking indicated that active ingredients (β-caryophyllene, alisol C) exhibited binding energies below -5.0 kcal/mol with key targets (TNF, HSP90AA1), and molecular dynamics simulations further validated their binding stability. In vitro experiments demonstrated that WLS significantly inhibited the proliferation of high glucose-induced HK-2 cells (P < 0.01) and induced G2/M phase cell cycle arrest (P < 0.01).

Conclusion: Wulingsan alleviates the progression of Diabetic Nephropathy by its multiple active ingredients acting synergistically on key targets such as SRC, AKT1, and TNF, thereby regulating PI3K-Akt and MAPK signaling pathways to inhibit inflammation, oxidative stress, and fibrosis. This research provides a theoretical basis for the clinical application of WLS, and its therapeutic efficacy warrants further verification through future in vivo experiments.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Frontiers in Molecular Biosciences
Frontiers in Molecular Biosciences Biochemistry, Genetics and Molecular Biology-Biochemistry
CiteScore
7.20
自引率
4.00%
发文量
1361
审稿时长
14 weeks
期刊介绍: Much of contemporary investigation in the life sciences is devoted to the molecular-scale understanding of the relationships between genes and the environment — in particular, dynamic alterations in the levels, modifications, and interactions of cellular effectors, including proteins. Frontiers in Molecular Biosciences offers an international publication platform for basic as well as applied research; we encourage contributions spanning both established and emerging areas of biology. To this end, the journal draws from empirical disciplines such as structural biology, enzymology, biochemistry, and biophysics, capitalizing as well on the technological advancements that have enabled metabolomics and proteomics measurements in massively parallel throughput, and the development of robust and innovative computational biology strategies. We also recognize influences from medicine and technology, welcoming studies in molecular genetics, molecular diagnostics and therapeutics, and nanotechnology. Our ultimate objective is the comprehensive illustration of the molecular mechanisms regulating proteins, nucleic acids, carbohydrates, lipids, and small metabolites in organisms across all branches of life. In addition to interesting new findings, techniques, and applications, Frontiers in Molecular Biosciences will consider new testable hypotheses to inspire different perspectives and stimulate scientific dialogue. The integration of in silico, in vitro, and in vivo approaches will benefit endeavors across all domains of the life sciences.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信