微波辅助下新型吲哚基1,3,4-恶二唑衍生物的分子对接、ADME和DFT研究

IF 2.7 4区 化学 Q1 CHEMISTRY, ORGANIC
Bandaru Gopi, Vijayaparthasarathi Vijayakumar
{"title":"微波辅助下新型吲哚基1,3,4-恶二唑衍生物的分子对接、ADME和DFT研究","authors":"Bandaru Gopi,&nbsp;Vijayaparthasarathi Vijayakumar","doi":"10.1002/ajoc.202500111","DOIUrl":null,"url":null,"abstract":"<p>A novel and efficient synthetic protocol has been developed for the preparation of indazole-1,3,4-oxadiazoles through microwave-assisted reactions, using both aromatic and aliphatic carboxylic acids as starting materials. The structural identification and purity of the synthesized compounds were confirmed using IR, ¹H NMR, ¹<sup>3</sup>C NMR, and HRMS spectral data. Additionally, their photophysical properties were characterized using ultraviolet–visible (UV–vis) and fluorescence spectroscopy to determine the absorption maxima and emission wavelengths. Among the synthesized derivatives, four compounds <b>8h, 8l, 13c</b>, and <b>13d</b> that exhibited the least energy band gaps were selected for detailed computational analysis using DFT. TD-DFT calculations were conducted to predict the theoretical UV–vis absorption spectra, which were then compared with experimental data, including molar extinction coefficients, Stokes shifts, and fluorescence quantum yields. Molecular docking studies were performed using AutoDock Version 1.5.6, along with structural data from the protein data bank (<b>PDB ID: 4EJN</b>), to evaluate the binding affinities of all derivatives. Compounds <b>8h, 8j, 13h</b>, and <b>13j</b> showed the most favorable binding energies. Finally, the pharmacokinetic and drug-likeness profiles of the compounds were evaluated using the SWISS ADME platform, which provided insights into their physicochemical properties and visualized gastrointestinal absorption and blood–brain barrier permeability through the BOILED-Egg predictive model.</p>","PeriodicalId":130,"journal":{"name":"Asian Journal of Organic Chemistry","volume":"14 8","pages":""},"PeriodicalIF":2.7000,"publicationDate":"2025-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Microwave-Assisted Rapid and Efficient Synthesis of Novel Indazole-Based 1,3,4-Oxadiazole Derivatives with Molecular Docking, ADME, and DFT Studies\",\"authors\":\"Bandaru Gopi,&nbsp;Vijayaparthasarathi Vijayakumar\",\"doi\":\"10.1002/ajoc.202500111\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>A novel and efficient synthetic protocol has been developed for the preparation of indazole-1,3,4-oxadiazoles through microwave-assisted reactions, using both aromatic and aliphatic carboxylic acids as starting materials. The structural identification and purity of the synthesized compounds were confirmed using IR, ¹H NMR, ¹<sup>3</sup>C NMR, and HRMS spectral data. Additionally, their photophysical properties were characterized using ultraviolet–visible (UV–vis) and fluorescence spectroscopy to determine the absorption maxima and emission wavelengths. Among the synthesized derivatives, four compounds <b>8h, 8l, 13c</b>, and <b>13d</b> that exhibited the least energy band gaps were selected for detailed computational analysis using DFT. TD-DFT calculations were conducted to predict the theoretical UV–vis absorption spectra, which were then compared with experimental data, including molar extinction coefficients, Stokes shifts, and fluorescence quantum yields. Molecular docking studies were performed using AutoDock Version 1.5.6, along with structural data from the protein data bank (<b>PDB ID: 4EJN</b>), to evaluate the binding affinities of all derivatives. Compounds <b>8h, 8j, 13h</b>, and <b>13j</b> showed the most favorable binding energies. Finally, the pharmacokinetic and drug-likeness profiles of the compounds were evaluated using the SWISS ADME platform, which provided insights into their physicochemical properties and visualized gastrointestinal absorption and blood–brain barrier permeability through the BOILED-Egg predictive model.</p>\",\"PeriodicalId\":130,\"journal\":{\"name\":\"Asian Journal of Organic Chemistry\",\"volume\":\"14 8\",\"pages\":\"\"},\"PeriodicalIF\":2.7000,\"publicationDate\":\"2025-06-23\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Asian Journal of Organic Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://aces.onlinelibrary.wiley.com/doi/10.1002/ajoc.202500111\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, ORGANIC\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Asian Journal of Organic Chemistry","FirstCategoryId":"92","ListUrlMain":"https://aces.onlinelibrary.wiley.com/doi/10.1002/ajoc.202500111","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, ORGANIC","Score":null,"Total":0}
引用次数: 0

摘要

以芳香族羧酸和脂肪族羧酸为原料,通过微波辅助反应制备吲哚-1,3,4-恶二唑,提出了一种新的高效合成方案。通过IR、¹H NMR、¹3C NMR和HRMS光谱数据对合成的化合物进行了结构鉴定和纯度鉴定。利用紫外-可见光谱和荧光光谱对其光物理性质进行了表征,确定了其最大吸收波长和发射波长。在合成的衍生物中,选取能带隙最小的4个化合物8h、81、13c和13d进行DFT详细计算分析。通过TD-DFT计算来预测理论紫外-可见吸收光谱,然后将其与实验数据进行比较,包括摩尔消光系数、Stokes位移和荧光量子产率。使用AutoDock Version 1.5.6进行分子对接研究,并使用蛋白质数据库(PDB ID: 4EJN)的结构数据来评估所有衍生物的结合亲和力。化合物8h、8j、13h和13j表现出最有利的结合能。最后,使用SWISS ADME平台评估化合物的药代动力学和药物相似谱,该平台通过煮鸡蛋预测模型提供了对其物理化学性质的见解,并可视化了胃肠道吸收和血脑屏障通透性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Microwave-Assisted Rapid and Efficient Synthesis of Novel Indazole-Based 1,3,4-Oxadiazole Derivatives with Molecular Docking, ADME, and DFT Studies

Microwave-Assisted Rapid and Efficient Synthesis of Novel Indazole-Based 1,3,4-Oxadiazole Derivatives with Molecular Docking, ADME, and DFT Studies

Microwave-Assisted Rapid and Efficient Synthesis of Novel Indazole-Based 1,3,4-Oxadiazole Derivatives with Molecular Docking, ADME, and DFT Studies

Microwave-Assisted Rapid and Efficient Synthesis of Novel Indazole-Based 1,3,4-Oxadiazole Derivatives with Molecular Docking, ADME, and DFT Studies

A novel and efficient synthetic protocol has been developed for the preparation of indazole-1,3,4-oxadiazoles through microwave-assisted reactions, using both aromatic and aliphatic carboxylic acids as starting materials. The structural identification and purity of the synthesized compounds were confirmed using IR, ¹H NMR, ¹3C NMR, and HRMS spectral data. Additionally, their photophysical properties were characterized using ultraviolet–visible (UV–vis) and fluorescence spectroscopy to determine the absorption maxima and emission wavelengths. Among the synthesized derivatives, four compounds 8h, 8l, 13c, and 13d that exhibited the least energy band gaps were selected for detailed computational analysis using DFT. TD-DFT calculations were conducted to predict the theoretical UV–vis absorption spectra, which were then compared with experimental data, including molar extinction coefficients, Stokes shifts, and fluorescence quantum yields. Molecular docking studies were performed using AutoDock Version 1.5.6, along with structural data from the protein data bank (PDB ID: 4EJN), to evaluate the binding affinities of all derivatives. Compounds 8h, 8j, 13h, and 13j showed the most favorable binding energies. Finally, the pharmacokinetic and drug-likeness profiles of the compounds were evaluated using the SWISS ADME platform, which provided insights into their physicochemical properties and visualized gastrointestinal absorption and blood–brain barrier permeability through the BOILED-Egg predictive model.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
4.70
自引率
3.70%
发文量
372
期刊介绍: Organic chemistry is the fundamental science that stands at the heart of chemistry, biology, and materials science. Research in these areas is vigorous and truly international, with three major regions making almost equal contributions: America, Europe and Asia. Asia now has its own top international organic chemistry journal—the Asian Journal of Organic Chemistry (AsianJOC) The AsianJOC is designed to be a top-ranked international research journal and publishes primary research as well as critical secondary information from authors across the world. The journal covers organic chemistry in its entirety. Authors and readers come from academia, the chemical industry, and government laboratories.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信