CLaSP:一个以对比学习为导向的药物相似性综合评价的潜在评分平台

IF 6.8 1区 医学 Q1 CHEMISTRY, MEDICINAL
Xinmin Li, Long Chen, Hongbo Yu, Le Xiong, Wenxiang Song, Xiang Li, Guixia Liu, Weihua Li and Yun Tang*, 
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引用次数: 0

摘要

有效的药物相似性评价对于加速药物发现和降低早期化合物筛选成本至关重要。然而,现有的方法要么依赖于严格的经验规则,要么依赖于监督分类模型,缺乏通用性和可解释性。本文介绍了一种将变分自动编码与三联体对比学习相结合的新型框架——对比学习引导潜评分平台(CLaSP),用于药物相似性评估。CLaSP构建了一个由物理化学和admet相关特征告知的结构化潜在空间,使CLaSP_Score能够连续、可解释,反映分子的可显影性。特征集从ADMETlab 3.0和admetSAR 3.0中提取,并通过特征选择进行细化。基准评估表明,CLaSP在多个数据集和实际案例研究中优于QED和DBPP-Predictor。此外,CLaSP有效地捕获了药物优化轨迹,如Wee1抑制剂的案例研究所示。用户友好的门户网站(https://lmmd.ecust.edu.cn/CLaSP)支持早期药物设计的单次和批量分析。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

CLaSP: A Contrastive Learning-Guided Latent Scoring Platform for Comprehensive Drug-Likeness Evaluation

CLaSP: A Contrastive Learning-Guided Latent Scoring Platform for Comprehensive Drug-Likeness Evaluation

Efficient drug-likeness evaluation is critical for accelerating drug discovery and reducing the costs of early stage compound screening. However, existing approaches either rely on rigid empirical rules or supervised classification models, which lack generalizability and interpretability. Here we introduce contrastive learning–guided latent scoring platform (CLaSP), a novel framework that integrates variational autoencoding with triplet contrastive learning for drug-likeness assessment. CLaSP constructs a structured latent space informed by both physicochemical and ADMET-related features, enabling a continuous, interpretable CLaSP_Score that reflects molecular developability. The feature set was curated from ADMETlab 3.0 and admetSAR 3.0 and refined via feature selection. Benchmark evaluations demonstrated that CLaSP outperformed QED and DBPP-Predictor across multiple data sets and real-world case studies. Furthermore, CLaSP effectively captured drug optimization trajectories, as shown in a case study of Wee1 inhibitors. A user-friendly web portal (https://lmmd.ecust.edu.cn/CLaSP) supports single and batch analyses for early drug design.

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来源期刊
Journal of Medicinal Chemistry
Journal of Medicinal Chemistry 医学-医药化学
CiteScore
4.00
自引率
11.00%
发文量
804
审稿时长
1.9 months
期刊介绍: The Journal of Medicinal Chemistry is a prestigious biweekly peer-reviewed publication that focuses on the multifaceted field of medicinal chemistry. Since its inception in 1959 as the Journal of Medicinal and Pharmaceutical Chemistry, it has evolved to become a cornerstone in the dissemination of research findings related to the design, synthesis, and development of therapeutic agents. The Journal of Medicinal Chemistry is recognized for its significant impact in the scientific community, as evidenced by its 2022 impact factor of 7.3. This metric reflects the journal's influence and the importance of its content in shaping the future of drug discovery and development. The journal serves as a vital resource for chemists, pharmacologists, and other researchers interested in the molecular mechanisms of drug action and the optimization of therapeutic compounds.
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