基于新型网络毒理学探讨乙酰柠檬酸三丁酯暴露于骨关节炎的潜在机制。

IF 3.9 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Qiwang He, Yining Chen, Caiyun Huang, Xiaoqian Cong, Yanan Li, Die Xiao, Yanbing Ding, Bijiang Wan
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引用次数: 0

摘要

枸橼酸乙酰三丁酯(ATBC)对人体的毒副作用令人担忧,但对其对骨关节炎(OA)的影响缺乏相关研究。因此,本研究旨在通过网络毒理学探讨ATBC在OA中的潜在靶点和作用机制。我们从ChEMBL、Swiss Target Prediction和STITCH数据库中获得atbc相关靶标,从GeneCards、DisGeNET和OMIM数据库中获得oa相关靶标,并确定了重叠靶标。通过STRING数据库和Cytoscape软件确定核心靶点(疾病进展中的关键分子),随后进行进一步的基因本体(GO)和京都基因与基因组百科全书(KEGG)富集分析,以深入确定潜在的机制。此外,构建了核心靶点的基因相互作用和竞争内源RNA (ceRNA)网络。此外,利用GEO数据库中的单细胞数据初步验证了核心靶点的表达水平。通过分子对接和分子动力学模拟对核心靶点进行深入验证。共鉴定出ATBC和OA之间的132个重叠靶点,并进一步筛选了6个核心靶点(TP53、EZH2、HDAC1、HDAC2、SIRT1和SMARCA4)。富集分析结果显示,ATBC对OA影响的核心通路主要涉及关键信号级联,包括甲状腺激素信号通路、Notch信号通路和细胞衰老。单细胞分析显示,核心靶点在不同的细胞亚群中表达。分子对接和分子动力学模拟结果表明,ATBC与核心靶点之间存在稳定的结合相互作用。本研究为ATBC引发OA的分子机制提供了理论基础,凸显了网络毒理学在新兴环境污染物毒性评估中的价值。然而,需要进一步的临床和实验研究来验证这些发现。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Exploring the potential mechanisms of acetyl tributyl citrate exposure on osteoarthritis based on novel network toxicology.

The toxic side effects of acetyl tributyl citrate (ATBC) on humans are concerning, but studies related to its effects on osteoarthritis (OA) are lacking. Therefore, this study aimed to explore the potential targets and mechanisms of action of ATBC in OA through network toxicology. We obtained ATBC-related targets from the ChEMBL, Swiss Target Prediction, and STITCH databases and OA-related targets from the GeneCards, DisGeNET, and OMIM databases and identified overlapping targets. Core targets (key molecules in the progression of diseases) were determined via the STRING database and Cytoscape software, followed by further Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses to determine potential mechanisms in depth. Moreover, a gene interaction and competing endogenous RNA (ceRNA) network for the core targets was constructed. Additionally, the expression levels of the core targets were preliminarily validated using single-cell data from the GEO database. Furthermore, in-depth validation of the core targets was carried out through molecular docking and molecular dynamics simulations. A total of 132 overlapping targets between ATBC and OA were identified, and six core targets (TP53, EZH2, HDAC1, HDAC2, SIRT1, and SMARCA4) were further screened. The results of the enrichment analysis revealed that the core pathways related to the effect of ATBC on OA mainly involved key signaling cascades, including the thyroid hormone signaling pathway, the Notch signaling pathway, and cellular senescence. Single-cell analysis revealed that the core target is expressed in different cell subpopulations. Molecular docking and molecular dynamics simulation results indicate that there is a stable binding interaction between ATBC and the core target. This study provides a theoretical foundation for the molecular mechanisms of OA triggered by ATBC, highlighting the value of network toxicology in assessing the toxicity of emerging environmental pollutants. However, further clinical and experimental investigations are needed to validate these findings.

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来源期刊
Scientific Reports
Scientific Reports Natural Science Disciplines-
CiteScore
7.50
自引率
4.30%
发文量
19567
审稿时长
3.9 months
期刊介绍: We publish original research from all areas of the natural sciences, psychology, medicine and engineering. You can learn more about what we publish by browsing our specific scientific subject areas below or explore Scientific Reports by browsing all articles and collections. Scientific Reports has a 2-year impact factor: 4.380 (2021), and is the 6th most-cited journal in the world, with more than 540,000 citations in 2020 (Clarivate Analytics, 2021). •Engineering Engineering covers all aspects of engineering, technology, and applied science. It plays a crucial role in the development of technologies to address some of the world''s biggest challenges, helping to save lives and improve the way we live. •Physical sciences Physical sciences are those academic disciplines that aim to uncover the underlying laws of nature — often written in the language of mathematics. It is a collective term for areas of study including astronomy, chemistry, materials science and physics. •Earth and environmental sciences Earth and environmental sciences cover all aspects of Earth and planetary science and broadly encompass solid Earth processes, surface and atmospheric dynamics, Earth system history, climate and climate change, marine and freshwater systems, and ecology. It also considers the interactions between humans and these systems. •Biological sciences Biological sciences encompass all the divisions of natural sciences examining various aspects of vital processes. The concept includes anatomy, physiology, cell biology, biochemistry and biophysics, and covers all organisms from microorganisms, animals to plants. •Health sciences The health sciences study health, disease and healthcare. This field of study aims to develop knowledge, interventions and technology for use in healthcare to improve the treatment of patients.
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