基于gan的玉米不同品种和发育阶段生长图像预测。

IF 4.4 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Xinyi Wang, Shilong Liu, Zhihao Wang, Zedong Geng, Weikun Li, Chengxiu Wu, Yingjie Xiao, Wanneng Yang, Lingfeng Duan
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引用次数: 0

摘要

背景:植物生长预测有助于生理学家和植物学家分析未来的发展趋势,从而缩短实验周期,降低成本。传统的生长预测方法主要关注表型性状,而不是图像,这导致视觉可解释性有限。结果:本文提出了一种基于改进的Pix2PixHD网络的可视化生长预测方法,该方法结合了空间注意机制、改进的损失函数和改进的dropout策略,提高了预测精度和视觉保真度。该方法可以利用早期的玉米图像来预测后期的图像。预测结果以分辨率为1024 × 1024像素的侧视图生长图像的形式呈现,从而能够捕获详细的器官级生长信息。本研究对24个中国基础自交系杂交获得的696个玉米品种进行了实验。结果表明,预测图像与实际图像的初始距离、峰值信噪比和结构相似度分别达到20.27、23.23和0.899。该模型在预测表型性状与实际表型性状之间的平均Pearson相关系数为0.939,并且在不同的时间间隔内保持稳健的性能。结果表明,该模型优于已有的相关研究。该代码可在网上获得。结论:该方法可以对基于高分辨率世代的多品种玉米生长进行较为现实的预测。此外,该方法还可以实现玉米整个生长周期的生长预测,预测精度高。本文为具有复杂生理结构的大型植物全生长周期的可视化生长预测提供了一种新的解决方案。本研究的一个主要局限性是它的重点是在均匀的环境条件下建模和预测作物生长,而没有考虑环境的可变性。未来的工作将旨在将不同的环境因素纳入模型,以提高其鲁棒性和预测准确性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

GAN-based image prediction of maize growth across varieties and developmental stages.

GAN-based image prediction of maize growth across varieties and developmental stages.

GAN-based image prediction of maize growth across varieties and developmental stages.

GAN-based image prediction of maize growth across varieties and developmental stages.

Background: Plant growth prediction assists physiologists and botanists in analyzing future development trends, thereby shortening experimental cycles and reducing costs. Traditional growth prediction methods mainly focused on phenotypic traits instead of images, which leads to limited visual interpretability.

Results: This article proposed a visualized growth prediction method based on an improved Pix2PixHD network, incorporating spatial attention mechanisms, an improved loss function, and a modified dropout strategy to enhance prediction accuracy and visual fidelity. The proposed method can employ maize images from early time points to predict the images of later stages. The prediction results are presented in the form of side-view growth images with a resolution of 1024 × 1024 pixels, enabling the capture of detailed, organ-level growth information. This study conducted experiments on 696 varieties, a highly genetically diverse maize population derived from the crossbreeding of 24 foundational Chinese inbred lines. The results showed that Fréchet Inception Distance, Peak Signal-to-Noise Ratio and structural similarity between the predicted images and the actual images reached 20.27, 23.23 and 0.899, respectively. The model achieved a mean Pearson correlation coefficient of 0.939 between predicted and actual phenotypic traits, while maintaining robust performance across different time intervals. It was also demonstrated that the model outperformed the existing related studies. The code is available online.

Conclusion: The results showed that the method can make realistic predictions of multi-variety maize growth based on high-resolution generation. Furthermore, it can achieve prediction of maize growth throughout the entire growth cycle with high accuracy. In conclusion, this article provided a novel solution for visualized growth prediction of large plants with complex physiological structures throughout the entire growth cycle. A primary limitation of this study is its focus on modeling and predicting crop growth under uniform environmental conditions, without considering environmental variability. Future work will aim to incorporate diverse environmental factors into the model to enhance its robustness and predictive accuracy.

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来源期刊
Plant Methods
Plant Methods 生物-植物科学
CiteScore
9.20
自引率
3.90%
发文量
121
审稿时长
2 months
期刊介绍: Plant Methods is an open access, peer-reviewed, online journal for the plant research community that encompasses all aspects of technological innovation in the plant sciences. There is no doubt that we have entered an exciting new era in plant biology. The completion of the Arabidopsis genome sequence, and the rapid progress being made in other plant genomics projects are providing unparalleled opportunities for progress in all areas of plant science. Nevertheless, enormous challenges lie ahead if we are to understand the function of every gene in the genome, and how the individual parts work together to make the whole organism. Achieving these goals will require an unprecedented collaborative effort, combining high-throughput, system-wide technologies with more focused approaches that integrate traditional disciplines such as cell biology, biochemistry and molecular genetics. Technological innovation is probably the most important catalyst for progress in any scientific discipline. Plant Methods’ goal is to stimulate the development and adoption of new and improved techniques and research tools and, where appropriate, to promote consistency of methodologies for better integration of data from different laboratories.
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