Sasa Zhang, Yi Liu, Haoyang Wang, Jing Peng, Kui Li, Ziwei Jiao, Yanbin Guo
{"title":"从硒化土壤中分离的硒化Cedecea selenatireducens sp. 11 .和硒化Rahnella sp. 11 .。","authors":"Sasa Zhang, Yi Liu, Haoyang Wang, Jing Peng, Kui Li, Ziwei Jiao, Yanbin Guo","doi":"10.1099/ijsem.0.006885","DOIUrl":null,"url":null,"abstract":"<p><p>Two Gram-stain-negative bacterial strains, designated S5-13<sup>T</sup> and S5-11<sup>T</sup>, were isolated from seleniferous soil in Enshi, PR China. Both strains demonstrated the ability to tolerate high concentrations of selenite and selenate and efficiently reduced these selenium oxyanions to elemental selenium. Phylogenetic and phylogenomic analyses revealed that strain S5-13<sup>T</sup> belongs to the genus <i>Cedecea</i>, while S5-11<sup>T</sup> is affiliated with the genus <i>Rahnella</i>. Strain S5-13<sup>T</sup> (genome size, 4.77 Mb; G+C content, 55.1 mol%) exhibited the closest relationship to <i>Cedecea neteri</i> ATCC 33855<sup>T</sup> with an average nucleotide identity (ANI) value of 91.4% and a digital DNA-DNA hybridization (dDDH) value of 46.2%. Additionally, phylogenomic analyses identified strain SSMD04 from the GenBank database as clustering within the genus <i>Cedecea</i> alongside strain S5-13<sup>T</sup>. The ANI and dDDH values between strains S5-13<sup>T</sup> and SSMD04 were 99.2% and 93.8 %, respectively, confirming their classification as the same species. Strain S5-11<sup>T</sup> (genome size, 5.45 Mb; G+C content, 52.4 mol%) showed the closest phylogenetic affinity to <i>Rahnella laticis</i> SAP-17<sup>T</sup> and <i>Rahnella contaminans</i> Lac-M11<sup>T</sup>, with ANI values of 94.4% and 92.7 %, respectively. S5-13<sup>T</sup> and S5-11<sup>T</sup> contained C<sub>16:0</sub> and C<sub>17:0</sub> cyclo as the dominant fatty acids. Phenotypic characteristics further distinguished strains S5-13<sup>T</sup> and S5-11<sup>T</sup> from their closest relatives. Based on these results, strain S5-13<sup>T</sup> and S5-11<sup>T</sup> represent novel species within the genera <i>Cedecea and Rahnella</i>, for which the names <i>Cedecea selenatireducens</i> sp. nov. (type strain S5-13<sup>T</sup>=GDMCC 1.4366<sup>T</sup>=JCM 37117<sup>T</sup>) and <i>Rahnella selenatireducens</i> sp. nov. (type strain S5-11<sup>T</sup>=GDMCC 1.4365<sup>T</sup>=JCM 37116<sup>T</sup>) are proposed.</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"75 8","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>Cedecea selenatireducens</i> sp. nov. and <i>Rahnella selenatireducens</i> sp. nov., isolated from the seleniferous soil.\",\"authors\":\"Sasa Zhang, Yi Liu, Haoyang Wang, Jing Peng, Kui Li, Ziwei Jiao, Yanbin Guo\",\"doi\":\"10.1099/ijsem.0.006885\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Two Gram-stain-negative bacterial strains, designated S5-13<sup>T</sup> and S5-11<sup>T</sup>, were isolated from seleniferous soil in Enshi, PR China. Both strains demonstrated the ability to tolerate high concentrations of selenite and selenate and efficiently reduced these selenium oxyanions to elemental selenium. Phylogenetic and phylogenomic analyses revealed that strain S5-13<sup>T</sup> belongs to the genus <i>Cedecea</i>, while S5-11<sup>T</sup> is affiliated with the genus <i>Rahnella</i>. Strain S5-13<sup>T</sup> (genome size, 4.77 Mb; G+C content, 55.1 mol%) exhibited the closest relationship to <i>Cedecea neteri</i> ATCC 33855<sup>T</sup> with an average nucleotide identity (ANI) value of 91.4% and a digital DNA-DNA hybridization (dDDH) value of 46.2%. Additionally, phylogenomic analyses identified strain SSMD04 from the GenBank database as clustering within the genus <i>Cedecea</i> alongside strain S5-13<sup>T</sup>. The ANI and dDDH values between strains S5-13<sup>T</sup> and SSMD04 were 99.2% and 93.8 %, respectively, confirming their classification as the same species. Strain S5-11<sup>T</sup> (genome size, 5.45 Mb; G+C content, 52.4 mol%) showed the closest phylogenetic affinity to <i>Rahnella laticis</i> SAP-17<sup>T</sup> and <i>Rahnella contaminans</i> Lac-M11<sup>T</sup>, with ANI values of 94.4% and 92.7 %, respectively. S5-13<sup>T</sup> and S5-11<sup>T</sup> contained C<sub>16:0</sub> and C<sub>17:0</sub> cyclo as the dominant fatty acids. Phenotypic characteristics further distinguished strains S5-13<sup>T</sup> and S5-11<sup>T</sup> from their closest relatives. Based on these results, strain S5-13<sup>T</sup> and S5-11<sup>T</sup> represent novel species within the genera <i>Cedecea and Rahnella</i>, for which the names <i>Cedecea selenatireducens</i> sp. nov. (type strain S5-13<sup>T</sup>=GDMCC 1.4366<sup>T</sup>=JCM 37117<sup>T</sup>) and <i>Rahnella selenatireducens</i> sp. nov. (type strain S5-11<sup>T</sup>=GDMCC 1.4365<sup>T</sup>=JCM 37116<sup>T</sup>) are proposed.</p>\",\"PeriodicalId\":14390,\"journal\":{\"name\":\"International journal of systematic and evolutionary microbiology\",\"volume\":\"75 8\",\"pages\":\"\"},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2025-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International journal of systematic and evolutionary microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006885\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International journal of systematic and evolutionary microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006885","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Cedecea selenatireducens sp. nov. and Rahnella selenatireducens sp. nov., isolated from the seleniferous soil.
Two Gram-stain-negative bacterial strains, designated S5-13T and S5-11T, were isolated from seleniferous soil in Enshi, PR China. Both strains demonstrated the ability to tolerate high concentrations of selenite and selenate and efficiently reduced these selenium oxyanions to elemental selenium. Phylogenetic and phylogenomic analyses revealed that strain S5-13T belongs to the genus Cedecea, while S5-11T is affiliated with the genus Rahnella. Strain S5-13T (genome size, 4.77 Mb; G+C content, 55.1 mol%) exhibited the closest relationship to Cedecea neteri ATCC 33855T with an average nucleotide identity (ANI) value of 91.4% and a digital DNA-DNA hybridization (dDDH) value of 46.2%. Additionally, phylogenomic analyses identified strain SSMD04 from the GenBank database as clustering within the genus Cedecea alongside strain S5-13T. The ANI and dDDH values between strains S5-13T and SSMD04 were 99.2% and 93.8 %, respectively, confirming their classification as the same species. Strain S5-11T (genome size, 5.45 Mb; G+C content, 52.4 mol%) showed the closest phylogenetic affinity to Rahnella laticis SAP-17T and Rahnella contaminans Lac-M11T, with ANI values of 94.4% and 92.7 %, respectively. S5-13T and S5-11T contained C16:0 and C17:0 cyclo as the dominant fatty acids. Phenotypic characteristics further distinguished strains S5-13T and S5-11T from their closest relatives. Based on these results, strain S5-13T and S5-11T represent novel species within the genera Cedecea and Rahnella, for which the names Cedecea selenatireducens sp. nov. (type strain S5-13T=GDMCC 1.4366T=JCM 37117T) and Rahnella selenatireducens sp. nov. (type strain S5-11T=GDMCC 1.4365T=JCM 37116T) are proposed.
期刊介绍:
Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names.
The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including:
Identification, characterisation and culture preservation
Microbial evolution and biodiversity
Molecular environmental work with strong taxonomic or evolutionary content
Nomenclature
Taxonomy and phylogenetics.