{"title":"马来西亚链霉菌亚种。samsunensis梳子。11 . solisilvae Streptomyces Zhou et al. 2017作为Streptomyces malaysiensis al - tai et al. 1999的异型同义词的重新分类。","authors":"Hisayuki Komaki","doi":"10.1099/ijsem.0.006852","DOIUrl":null,"url":null,"abstract":"<p><p>Taxonomic relationships were investigated among <i>Streptomyces malaysiensis</i> Al-Tai <i>et al</i>. 1999, <i>Streptomyces samsunensis</i> Sazak <i>et al.</i> 2011 and <i>Streptomyces solisilvae</i> Zhou <i>et al.</i> 2017. Phylogenetic analyses suggested that these three species are closely related. Digital DNA-DNA hybridization value and average nucleotide identity based on blast+ between <i>S. malaysiensis</i> JCM 10672<sup>T</sup> and <i>S. solisilvae</i> HNM0141<sup>T</sup> were 99.8 and 99.9%, whereas those between <i>S. samsunensis</i> DSM 42010<sup>T</sup> and the remaining two were 75.4-75.6 and 95.0-96.5%, respectively. Their major phenotypic characteristics resembled each other except for the utilizations of <i>myo</i>-inositol and d-xylose by <i>S. samsunensis</i>. All the type-I polyketide synthase (PKS) and non-ribosomal peptide synthetase (NRPS) gene clusters were conserved between type strains of <i>S. malaysiensis</i> and <i>S. solisilvae</i>, but the type strain of <i>S. samsunensis</i> harboured 4 specific PKS and NRPS gene clusters instead of 11 clusters present in type strains of <i>S. malaysiensis</i> and <i>S. solisilvae</i>. Therefore, <i>S. solisilvae</i> and S. <i>samsunensis</i> were reclassified as a later heterotypic synonym of <i>S. malaysiensis</i> and S. <i>malaysiensis</i> subsp. <i>samsunensis</i> comb. nov., respectively. Based on the reclassifications, scientific names of whole genome sequence-published non-type strains related to the species were reviewed and updated.</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"75 8","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>Streptomyces malaysiensis</i> subsp. <i>samsunensis</i> comb. nov. and reclassification of <i>Streptomyces solisilvae</i> Zhou <i>et al</i>. 2017 as a heterotypic synonym of <i>Streptomyces malaysiensis</i> Al-Tai <i>et al</i>. 1999.\",\"authors\":\"Hisayuki Komaki\",\"doi\":\"10.1099/ijsem.0.006852\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Taxonomic relationships were investigated among <i>Streptomyces malaysiensis</i> Al-Tai <i>et al</i>. 1999, <i>Streptomyces samsunensis</i> Sazak <i>et al.</i> 2011 and <i>Streptomyces solisilvae</i> Zhou <i>et al.</i> 2017. Phylogenetic analyses suggested that these three species are closely related. Digital DNA-DNA hybridization value and average nucleotide identity based on blast+ between <i>S. malaysiensis</i> JCM 10672<sup>T</sup> and <i>S. solisilvae</i> HNM0141<sup>T</sup> were 99.8 and 99.9%, whereas those between <i>S. samsunensis</i> DSM 42010<sup>T</sup> and the remaining two were 75.4-75.6 and 95.0-96.5%, respectively. Their major phenotypic characteristics resembled each other except for the utilizations of <i>myo</i>-inositol and d-xylose by <i>S. samsunensis</i>. All the type-I polyketide synthase (PKS) and non-ribosomal peptide synthetase (NRPS) gene clusters were conserved between type strains of <i>S. malaysiensis</i> and <i>S. solisilvae</i>, but the type strain of <i>S. samsunensis</i> harboured 4 specific PKS and NRPS gene clusters instead of 11 clusters present in type strains of <i>S. malaysiensis</i> and <i>S. solisilvae</i>. Therefore, <i>S. solisilvae</i> and S. <i>samsunensis</i> were reclassified as a later heterotypic synonym of <i>S. malaysiensis</i> and S. <i>malaysiensis</i> subsp. <i>samsunensis</i> comb. nov., respectively. Based on the reclassifications, scientific names of whole genome sequence-published non-type strains related to the species were reviewed and updated.</p>\",\"PeriodicalId\":14390,\"journal\":{\"name\":\"International journal of systematic and evolutionary microbiology\",\"volume\":\"75 8\",\"pages\":\"\"},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2025-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International journal of systematic and evolutionary microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006852\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International journal of systematic and evolutionary microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006852","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Streptomyces malaysiensis subsp. samsunensis comb. nov. and reclassification of Streptomyces solisilvae Zhou et al. 2017 as a heterotypic synonym of Streptomyces malaysiensis Al-Tai et al. 1999.
Taxonomic relationships were investigated among Streptomyces malaysiensis Al-Tai et al. 1999, Streptomyces samsunensis Sazak et al. 2011 and Streptomyces solisilvae Zhou et al. 2017. Phylogenetic analyses suggested that these three species are closely related. Digital DNA-DNA hybridization value and average nucleotide identity based on blast+ between S. malaysiensis JCM 10672T and S. solisilvae HNM0141T were 99.8 and 99.9%, whereas those between S. samsunensis DSM 42010T and the remaining two were 75.4-75.6 and 95.0-96.5%, respectively. Their major phenotypic characteristics resembled each other except for the utilizations of myo-inositol and d-xylose by S. samsunensis. All the type-I polyketide synthase (PKS) and non-ribosomal peptide synthetase (NRPS) gene clusters were conserved between type strains of S. malaysiensis and S. solisilvae, but the type strain of S. samsunensis harboured 4 specific PKS and NRPS gene clusters instead of 11 clusters present in type strains of S. malaysiensis and S. solisilvae. Therefore, S. solisilvae and S. samsunensis were reclassified as a later heterotypic synonym of S. malaysiensis and S. malaysiensis subsp. samsunensis comb. nov., respectively. Based on the reclassifications, scientific names of whole genome sequence-published non-type strains related to the species were reviewed and updated.
期刊介绍:
Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names.
The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including:
Identification, characterisation and culture preservation
Microbial evolution and biodiversity
Molecular environmental work with strong taxonomic or evolutionary content
Nomenclature
Taxonomy and phylogenetics.