新发现的预测葡萄膜黑色素瘤预后的嗜铁相关基因标记。

IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Methods Pub Date : 2025-10-01 Epub Date: 2025-08-06 DOI:10.1016/j.ymeth.2025.08.001
Yifei Zhang, Junfang Li, Yu Zhang, Yi Qu
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引用次数: 0

摘要

背景:葡萄膜黑色素瘤是成人最常见的原发性眼内恶性肿瘤,具有显著的患者间异质性和较差的长期预后。铁下垂是一种铁依赖性的调节细胞死亡形式,已成为一种有希望的癌症治疗途径,但其在UVM中的作用仍未充分探索。方法:采用单变量Cox回归、LASSO回归和随机森林算法,系统筛选与UVM预后相关的铁中毒相关基因(FRGs)。使用来自癌症基因组图谱和基因表达综合队列的数据构建和验证预后特征。我们进一步评估了该模型与临床病理特征、肿瘤免疫微环境和药物敏感性的关系。体外实验验证了该特征中最关键的基因SIRT3的功能作用。结果:基于frg的预后模型包括SIRT3、RRM2和PANX2,并成功地将患者分为高危组和低危组,生存结果显著不同。多因素Cox回归证实风险评分为独立的预后因素。高危患者表现出免疫抑制的微环境特征,包括调节性T细胞和巨噬细胞浸润升高,以及对免疫检查点阻断的预测应答较低。药物敏感性分析鉴定出10种在高危人群中具有较低预测IC50值的化合物,提示潜在的治疗相关性。功能分析表明,SIRT3敲低促进UVM细胞增殖和迁移,同时减弱对铁下垂的敏感性,突出其肿瘤抑制作用。结论:本研究提出了一种新的FRG特征,在UVM中具有很强的预后和免疫学意义。该模型为风险分层提供了一个有前途的工具,并可能有助于指导铁下垂和基于免疫治疗的精确治疗。我们的研究结果还表明SIRT3在UVM中作为铁下垂致敏剂,代表了一个潜在的治疗靶点,值得进一步研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A newly developed ferroptosis-related gene signature for forecasting prognosis in uveal melanoma.

Background: Uveal melanoma is the most common primary intraocular malignancy in adults, characterized by significant inter-patient heterogeneity and poor long-term prognosis. Ferroptosis, an iron-dependent form of regulated cell death, has emerged as a promising avenue for cancer therapy, yet its role in UVM remains insufficiently explored.

Methods: We systematically screened ferroptosis-related genes (FRGs) associated with UVM prognosis by integrating univariate Cox regression, LASSO regression, and Random Forest algorithms. A prognostic signature was constructed and validated using data from The Cancer Genome Atlas and Gene Expression Omnibus cohorts. We further evaluated the model's association with clinicopathological features, tumor immune microenvironment, and drug sensitivity. In vitro experiments were conducted to validate the functional role of SIRT3, the most pivotal gene in the signature.

Results: A robust FRG-based prognostic model comprising SIRT3, RRM2, and PANX2 was developed and successfully stratified patients into high- and low-risk groups with significantly different survival outcomes. Multivariate Cox regression confirmed the risk score as an independent prognostic factor. High-risk patients exhibited immunosuppressive microenvironmental features, including elevated regulatory T cells and macrophage infiltration, as well as lower predicted response to immune checkpoint blockade. Drug sensitivity analysis identified ten compounds with lower predicted IC50 values in the high-risk group, suggesting potential therapeutic relevance. Functional assays demonstrated that SIRT3 knockdown promoted UVM cell proliferation and migration, while attenuating susceptibility to ferroptosis, highlighting its tumor-suppressive role.

Conclusion: This study presents a novel FRG signature with strong prognostic and immunological implications in UVM. The model offers a promising tool for risk stratification and may assist in guiding ferroptosis- and immunotherapy-based precision treatment. Our findings also suggest that SIRT3 acts as a ferroptosis sensitizer in UVM, representing a potential therapeutic target warranting further investigation.

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来源期刊
Methods
Methods 生物-生化研究方法
CiteScore
9.80
自引率
2.10%
发文量
222
审稿时长
11.3 weeks
期刊介绍: Methods focuses on rapidly developing techniques in the experimental biological and medical sciences. Each topical issue, organized by a guest editor who is an expert in the area covered, consists solely of invited quality articles by specialist authors, many of them reviews. Issues are devoted to specific technical approaches with emphasis on clear detailed descriptions of protocols that allow them to be reproduced easily. The background information provided enables researchers to understand the principles underlying the methods; other helpful sections include comparisons of alternative methods giving the advantages and disadvantages of particular methods, guidance on avoiding potential pitfalls, and suggestions for troubleshooting.
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